BMRB Entry 10279

Title:
Solution structure of the PH domain of Docking protein 2 from human
Deposition date:
2008-12-15
Original release date:
2009-12-14
Authors:
Li, H.; Tomizawa, T.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.
Citation:

Citation: Li, H.; Tomizawa, T.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of the PH domain of Docking protein 2 from human"  .

Assembly members:

Assembly members:
PH domain, polymer, 127 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: cell free synthesis   Vector: P050302-66

Data sets:
Data typeCount
13C chemical shifts512
15N chemical shifts118
1H chemical shifts806

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1PH domain1

Entities:

Entity 1, PH domain 127 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYMETGLYASP
2   GLYALAVALLYSGLNGLYPHELEUTYRLEU
3   GLNGLNGLNGLNTHRPHEGLYLYSLYSTRP
4   ARGARGPHEGLYALASERLEUTYRGLYGLY
5   SERASPCYSALALEUALAARGLEUGLULEU
6   GLNGLUGLYPROGLULYSPROARGARGCYS
7   GLUALAALAARGLYSVALILEARGLEUSER
8   ASPCYSLEUARGVALALAGLUALAGLYGLY
9   GLUALASERSERPROARGASPTHRSERALA
10   PHEPHELEUGLUTHRLYSGLUARGLEUTYR
11   LEULEUALAALAPROALAALAGLUARGGLY
12   ASPTRPVALGLNALAILECYSLEULEUALA
13   PHESERGLYPROSERSERGLY

Samples:

sample_1: PH domain, [U-13C; U-15N], 0.93 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296 K

Experiments:

NameSampleSample stateSample conditions
3D 13C-separated NOESYsample_1isotropiccondition_1
3D 15N-separated NOESYsample_1isotropiccondition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20030801, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.932, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

  • Bruker AVANCE 800 MHz

Related Database Links:

PDB
DBJ BAF84815 BAI47087
GB AAC13265 AAH32623 ABM87807 ABM92167 AIC55516
REF NP_003965 XP_002818909 XP_003823668 XP_004046784 XP_009453218
SP O60496
AlphaFold O60496

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks