BMRB Entry 20060

Title:
Solution structure of designed peptide, YI12FF in the presence of LPS bilayer
Deposition date:
2008-12-01
Original release date:
2009-06-29
Authors:
Bhunia, Anirban; Bhattacharjya, Surajit
Citation:

Citation: Bhunia, Anirban; Mohanram, Harini; Domadia, Prerna; Torres, Jaume; Bhattacharjya, Surajit. "Designed beta-boomerang antiendotoxic and antimicrobial peptides: structures and activities in lipopolysaccharide"  J. Biol. Chem. 284, 21991-22004 (2009).
PubMed: 19520860

Assembly members:

Assembly members:
YI12FF, polymer, 12 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
YI12FF: YVLFKRKRFIFI

Data sets:
Data typeCount
1H chemical shifts80

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1YI12FF1

Entities:

Entity 1, YI12FF 12 residues - Formula weight is not available

1   TYRVALLEUPHELYSARGLYSARGPHEILE
2   PHEILE

Samples:

sample_1: YI12FF+LPS 0.5 ± 0.02 mM; H2O 90%; D2O 10%

sample_conditions_1: pH: 4.5; temperature: 288 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D 1H-1H trNOESYsample_1isotropicsample_conditions_1

Software:

DYANA v1.5, Guntert, Braun and Wuthrich - refinement

NMR spectrometers:

  • Bruker DRX 600 MHz