BMRB Entry 6844

Name: Solution Structure of Drosophila melanogaster SNF RBD2
Published: 2009-10-20

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PDB ID: 2aym
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: LACS
BMRB Entry DOI: doi:10.13018/BMR6844
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of Drosophila melanogaster SNF RBD2

Deposition date:

2005-09-29

Original release date:

2009-10-20

Authors:

Cui, G.; Li, C.; Jin, C.; Xia, B.

Citation:

Citation: Jicheng, Hu; Gaofeng, Cui; Congmin, Li; Cong, Liu; Erchang, Shang; Luhua, Lai; Changwen, Jin; Jiwu, Wang; Bin, Xia. "Structure and Novel Functional Mechanism of Drosophila SNF in Sex-Lethal Splicing" PLoS One 4, 6890-. (2009).
PubMed: 19727396

Assembly members:

Assembly members:
U1 small nuclear ribonucleoprotein A, polymer, 83 residues, Formula weight is not available

Natural source:

Natural source: Common Name: fruit fly Taxonomy ID: 7227 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Drosophila melanogaster

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
U1 small nuclear ribonucleoprotein A: AQTEQPPNQILFLTNLPEET NEMMLSMLFNQFPGFKEVRL VPNRHDIAFVEFTTELQSNA AKEALQGFKITPTHAMKITF AKK

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
13C chemical shifts	339
15N chemical shifts	90
1H chemical shifts	601

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	U1 small nuclear ribonucleoprotein A	1

Entities:

Entity 1, U1 small nuclear ribonucleoprotein A 83 residues - Formula weight is not available

1

ALA

GLN

THR

GLU

GLN

PRO

ASN

GLN

ILE

2

LEU

PHE

LEU

THR

ASN

LEU

PRO

GLU

THR

3

ASN

GLU

MET

LEU

SER

MET

LEU

PHE

ASN

4

GLN

PHE

PRO

GLY

PHE

LYS

GLU

VAL

ARG

LEU

5

VAL

PRO

ASN

ARG

HIS

ASP

ILE

ALA

PHE

VAL

6

GLU

PHE

THR

GLU

LEU

GLN

SER

ASN

ALA

7

ALA

LYS

GLU

ALA

LEU

GLN

GLY

PHE

LYS

ILE

8

THR

PRO

THR

HIS

ALA

MET

LYS

ILE

THR

PHE

9

ALA

LYS

Samples:

sample_1: U1 small nuclear ribonucleoprotein A, [U-15N; U-13C], 1 mM; phosphate buffer 50 mM; EDTA 1 mM; NaCl 50 mM; H2O 90%; D2O 10%

sample_cond_1: ionic strength: 250 mM; pH: 7.2; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	not available	not available	not available
3D 15N-separated NOESY	not available	not available	not available

Software:

xwinnmr v3.5 - collection

NMRPipe v2.1 - processing

NMRView v5 - data analysis

CYANA v1.0.6 - structure solution

AMBER v7.0 - refinement

NMR spectrometers:

Bruker AVANCE 600 MHz

PDB	2AYM 2B0G
GB	AAA28441 AAA28903 AAF46017 AAL29039 ACL84772
REF	NP_511045 XP_001355411 XP_001964014 XP_001976948 XP_001992159
SP	P43332
AlphaFold	P43332