BMRB Entry 25179

Name: Backbone resonance assignments of the wt NS4A N-terminal domain of DENV
Published: 2015-03-25

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR25179

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Backbone resonance assignments of the wt NS4A N-terminal domain of DENV

Deposition date:

2014-08-29

Original release date:

2015-03-25

Authors:

Willbold, Dieter; Koenig, Bernd; Hung, Yu-Fu; Schwarten, Melanie

Citation:

Citation: Hung, Yu-Fu; Schuenke, Sven; Schwarten, Melanie; Thiagarajan, Pallavi; Hoffmann, Silke; Sklan, Ella; Willbold, Dieter; Koenig, Bernd. "Dengue virus NS4A cytoplasmic domain binding to liposomes is sensitive to membrane curvature" Biochim. Biophys. Acta 1848, 1119-1126 (2015).
PubMed: 25644870

Assembly members:

Assembly members:
wtNS4A, polymer, 48 residues, 5226.9633 Da.

Natural source:

Natural source: Common Name: Dengue virus 2 Taxonomy ID: 11060 Superkingdom: Viruses Kingdom: not available Genus/species: Flavivirus Dengue virus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pGEX-4T-2

Entity Sequences (FASTA):

Entity Sequences (FASTA):
wtNS4A: SLTLNLITEMGRLPTFMTQK ARDALDNLAVLHTAEAGGRA YNHALSEL

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list

Data type	Count
1H chemical shifts	168
13C chemical shifts	137
15N chemical shifts	46

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	wtNS4A	1

Entities:

Entity 1, wtNS4A 48 residues - 5226.9633 Da.

1

SER

LEU

THR

LEU

ASN

LEU

ILE

THR

GLU

MET

2

GLY

ARG

LEU

PRO

THR

PHE

MET

THR

GLN

LYS

3

ALA

ARG

ASP

ALA

LEU

ASP

ASN

LEU

ALA

VAL

4

LEU

HIS

THR

ALA

GLU

ALA

GLY

ARG

ALA

5

TYR

ASN

HIS

ALA

LEU

SER

GLU

LEU

Samples:

NMR_sample: wtNS4A, [U-13C; U-15N], 1.0 mM; Sodium Dodecyl Sulfate, [U-2H], 100.0 mM; Sodium Phosphate 50.0 mM; sodium azide 0.03 % w/v; H2O 90%; D2O 10%

NMR_sample_ref: wtNS4A, [U-13C; U-15N], 1.0 mM; Sodium Dodecyl Sulfate, [U-2H], 100.0 mM; Sodium Phosphate 50.0 mM; DSS 10 mM; sodium azide 0.03 % w/v; H2O 90%; D2O 10%

Set_1: ionic strength: 150.000 mM; pH: 6.800; pressure: 1.000 atm; temperature: 303.000 K

Set_2: ionic strength: 150.000 mM; pH: 6.800; pressure: 1.000 atm; temperature: 303.000 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC/HMQC	NMR_sample	isotropic	Set_1
3D HNCACB	NMR_sample	isotropic	Set_1
HNHA (H[N[ca[HA]]])	NMR_sample	isotropic	Set_1
3D HNCO	NMR_sample	isotropic	Set_1
2D 1H-13C HSQC/HMQC	NMR_sample_ref	isotropic	Set_2
2D 1H-13C HSQC/HMQC	NMR_sample	isotropic	Set_1
2D 1H-15N HSQC/HMQC	NMR_sample	isotropic	Set_1

Software:

CcpNmr_Analysis v2.4, CCPN - chemical shift assignment

NMRPipe v8.1, NIH - processing

TALOS-N v4.01, Yang Shen and Ad Bax - data analysis

NMR spectrometers:

Varian VNMRS 900 MHz
Varian VNMRS 800 MHz

GenBank	np739588
BMRB	25586
DBJ	BAD42415 BAD42416 BAD42417 BAH86603 BAH86604
EMBL	CAD31751 CAI92123 CAR65133 CAR65134 CAR65135
GB	AAA42941 AAA42942 AAA42962 AAA73185 AAA73186
REF	NP_056776 NP_739588
SP	P07564 P12823 P14337 P14340 P29990
AlphaFold	P29990 P07564 P12823 P14337 P14340