BMRB Entry 25345

Title:
Second calciumbinding domain from P. falciparum CDPK3
Deposition date:
2014-11-14
Original release date:
2014-12-16
Authors:
Lundstrom, Patrik
Citation:

Citation: Niklasson, Markus; Ahlner, Alexandra; Andresen, Cecilia; Marsh, Joseph; Lundstrom, Patrik. "Fast and accurate resonance assignment of small-to-large proteins by combining automated and manual approaches"  PLOS Comput. Biol. 11, e1004022-e1004022 (2015).
PubMed: 25569628

Assembly members:

Assembly members:
PfCDPK3_CLD(B), polymer, 90 residues, Formula weight is not available
CALCIUM ION, non-polymer, 40.078 Da.

Natural source:

Natural source:   Common Name: E. Coli   Taxonomy ID: 469008   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Escherichia coli

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: N.A.

Entity Sequences (FASTA):

Data sets:
Data typeCount
13C chemical shifts245
15N chemical shifts84
1H chemical shifts84

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1CLD(B)1
2Calcium Ion2

Entities:

Entity 1, CLD(B) 90 residues - Formula weight is not available

1   SERGLYVALASPLEUGLYTHRGLUASNLEU
2   TYRPHEGLNASNGLNLEUSERLYSLYSLEU
3   ILETYRCYSALAPHEARGVALPHEASPVAL
4   ASPASNASPGLYGLUILETHRTHRALAGLU
5   LEUALAHISILELEUTYRASNGLYASNLYS
6   LYSGLYASNILETHRGLNARGASPVALASN
7   ARGVALLYSARGMETILEARGASPVALASP
8   LYSASNASNASPGLYLYSILEASPPHEHIS
9   GLUPHESERGLUMETMETLYSLEULYSPHE

Entity 2, Calcium Ion - Ca - 40.078 Da.

1   CA

Samples:

sample_1: PfCDPK3 CLD(B), [U-100% 13C; U-100% 15N], 0.5 mM; H2O 90%; D2O 10%; glycerol 5%; TRIS 10 mM; NaCl 100 mM; CaCl2 4 mM; TCEP 2 mM; DTT 4 mM; NaN3 100 uM

sample_conditions_1: ionic strength: 114 mM; pH: 7.1; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HN(CA)COsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1

Software:

COMPASS, Goddard, Niklasson, Ahlner, Andresen, Marsh, Lundstrom - chemical shift assignment, peak picking

SPARKY, Goddard, T.D. and Kneller G.D. - peak picking, visulaization

NMR spectrometers:

  • Varian INOVA 600 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks