BMRB Entry 26888

Title:
Complete 1H 13C 15N chemical shift assignments of Mycobacterial Heparin-Binding Hemagglutinin in association with heparin analogs
Deposition date:
2016-09-06
Original release date:
2017-08-11
Authors:
CHYAN, Chia-Lin; Irene, Deli; Tai, Tzu-Jui; Lain, Shih-Han
Citation:

Citation: Zulueta, Medel; Lin, Shu-Yi; Lin, Ya-Ting; Huang, Ching-Jui; Wang, Chun-Chih; Ku, Chiao-Chu; Shi, Zhonghao; Chyan, Chia-Lin; Irene, Deli; Lim, Liang-Hin; Tsai, Tsung-I; Hu, Yu-Peng; Arco, Susan; Wong, Chi-Huey; Hung, Shang-Cheng. "alpha-Glycosylation by D-glucosamine-derived donors: synthesis of heparosan and heparin analogues that interact with mycobacterial heparin-binding hemagglutinin"  J. Am. Chem. Soc. 134, 8988-8995 (2012).
PubMed: 22587381

Assembly members:

Assembly members:
HBHA110-199, polymer, 90 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Mycobacterium tuberculosis   Taxonomy ID: 1773   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Mycobacterium tuberculosis

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET

Entity Sequences (FASTA):

Data sets:
Data typeCount
13C chemical shifts373
15N chemical shifts84
1H chemical shifts604

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1HBHA110-1991

Entities:

Entity 1, HBHA110-199 90 residues - Formula weight is not available

1   ARGSERGLNGLNSERPHEGLUGLUVALSER
2   ALAARGALAGLUGLYTYRVALASPGLNALA
3   VALGLULEUTHRGLNGLUALALEUGLYTHR
4   VALALASERGLNTHRARGALAVALGLYGLU
5   ARGALAALALYSLEUVALGLYILEGLULEU
6   PROLYSLYSALAALAPROALALYSLYSALA
7   ALAPROALALYSLYSALAALAPROALALYS
8   LYSALAALAALALYSLYSALAPROALALYS
9   LYSALAALAALALYSLYSVALTHRGLNLYS

Samples:

sample_1: HBHA110-199, [U-99% 13C; U-99% 15N], 200 uM; Heparin analog 400 uM

sample_conditions_1: ionic strength: 0.1 M; pH: 6.5; pressure: 1 atm; temperature: 278 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQCsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D C(CO)NHsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HCCH-TOCSYsample_1isotropicsample_conditions_1
3D HCCH-COSYsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-13C NOESYsample_1isotropicsample_conditions_1

Software:

AURELIA, Neidig, Geyer, Gorler, Antz, Saffrich, Beneicke, Kalbitzer - chemical shift assignment

NMR spectrometers:

  • Bruker Avance 850 MHz
  • Bruker Avance 600 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks