BMRB Entry 6557

Title:
Solution Conformation of adr subtype HBV Pre-S2 Epitope
Deposition date:
2005-03-18
Original release date:
2007-11-14
Authors:
Chi, S.-W.; Han, K.-H.
Citation:

Citation: Chi, S.-W.; Kim, D.-H.; Kim, J.-S.; Lee, M.-K.; Han, K.-H.. "Solution conformation of an immunodominant epitope in the hepatitis B virus preS2 surface antigen"  Antiviral Res. 72, 207-215 (2006).
PubMed: 16872688

Assembly members:

Assembly members:
Major surface antigen, polymer, 23 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Hepatitis B virus   Taxonomy ID: 10407   Superkingdom: Viruses   Kingdom: not available   Genus/species: Orthohepadnavirus Hepatitis B virus

Experimental source:

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Major surface antigen: NSTTFHQALLDPRVRGLYFP AGG

Data sets:
Data typeCount
1H chemical shifts152
coupling constants15

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Major surface antigen1

Entities:

Entity 1, Major surface antigen 23 residues - Formula weight is not available

1   ASNSERTHRTHRPHEHISGLNALALEULEU
2   ASPPROARGVALARGGLYLEUTYRPHEPRO
3   ALAGLYGLY

Samples:

sample_1: Major surface antigen 5 mM; CD3OH 95%; H2O 5%

sample_2: Major surface antigen 5 mM; D2O 100%

sample_cond_1: ionic strength: 0 .; pH: 3.85; pressure: 1 atm; temperature: 288 K

Experiments:

NameSampleSample stateSample conditions
2D NOESYnot availablenot availablenot available
2D TOCSYnot availablenot availablenot available
DQF-COSYnot availablenot availablenot available
PE-COSYnot availablenot availablenot available

Software:

VNMR v6.1B - collection

FELIX v98.0 - processing

DISCOVER v2.98 - refinement

NMR spectrometers:

  • Varian UNITY 500 MHz

Related Database Links:

PDB
DBJ BAA00944 BAA02359 BAA04920 BAA04924 BAA04928
EMBL CAA25747 CAA36251 CAA37114 CAD34587 CAR70008
GB AAB36406 AAB88749 AAB88752 AAF15903 AAF82724
PRF 1011236B
REF YP_355333 YP_355334
SP P03140 P12934 P31868 Q76R62 Q81162
AlphaFold P12934 P03140 Q81162 P31868 Q76R62