BMRB Entry 6883

Title:
Ufd1
Deposition date:
2005-11-02
Original release date:
2007-11-29
Authors:
Park, sunghyouk; Isaacson, Rivka; Silver, Pamela; Wagner, Gerhard
Citation:

Citation: Park, Sunghyouk; Isaacson, Rivka; Kim, P.; Silver, Pamela; Wagner, Gerhard. "Ufd1 exhibits the AAA-ATPase fold with two distinct ubiquitin interaction sites"  Structure 13, 995-1005 (2005).
PubMed: 16004872

Assembly members:

Assembly members:
Ufd1, polymer, 208 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Baker's yeast   Taxonomy ID: 4932   Superkingdom: Eukaryota   Kingdom: Fungi   Genus/species: Saccharomyces cerevisiae

Experimental source:

Experimental source:   Production method: recombinant technology

Data sets:
Data typeCount
13C chemical shifts755
15N chemical shifts187
1H chemical shifts1227

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Ufd11

Entities:

Entity 1, Ufd1 208 residues - Formula weight is not available

1   METPHESERGLYPHESERSERPHEGLYGLY
2   GLYASNGLYPHEVALASNMETPROGLNTHR
3   PHEGLUGLUPHEPHEARGCYSTYRPROILE
4   ALAMETMETASNASPARGILEARGLYSASP
5   ASPALAASNPHEGLYGLYLYSILEPHELEU
6   PROPROSERALALEUSERLYSLEUSERMET
7   LEUASNILEARGTYRPROMETLEUPHELYS
8   LEUTHRALAASNGLUTHRGLYARGVALTHR
9   HISGLYGLYVALLEUGLUPHEILEALAGLU
10   GLUGLYARGVALTYRLEUPROGLNTRPMET
11   METGLUTHRLEUGLYILEGLNPROGLYSER
12   LEULEUGLNILESERSERTHRASPVALPRO
13   LEUGLYGLNPHEVALLYSLEUGLUPROGLN
14   SERVALASPPHELEUASPILESERASPPRO
15   LYSALAVALLEUGLUASNVALLEUARGASN
16   PHESERTHRLEUTHRVALASPASPVALILE
17   GLUILESERTYRASNGLYLYSTHRPHELYS
18   ILELYSILELEUGLUVALLYSPROGLUSER
19   SERSERLYSSERILECYSVALILEGLUTHR
20   ASPLEUVALTHRASPPHEALAPROPROVAL
21   GLYTYRVALGLUPROASPTYRLYS

Samples:

sample_1: Ufd1, [U-13C; U-15N], 0.2 mM

conditions_1: temperature: 307 K

Experiments:

NameSampleSample stateSample conditions
1H15N HSQCsample_1not availableconditions_1
HNCAsample_1not availableconditions_1
HNCACOsample_1not availableconditions_1
HNCOsample_1not availableconditions_1
HNCOCAsample_1not availableconditions_1

Software:

No software information available

NMR spectrometers:

  • Varian Inova 500 MHz
  • Varian Inova 600 MHz
  • Bruker ARX 500 MHz
  • Bruker ARX 600 MHz
  • Varian Unity` 750 MHz

Related Database Links:

PDB
DBJ GAA23430
EMBL CAA97047 CAY79809
GB AAB46627 AAC49023 AAT92825 AAZ22463 AHY79412
REF NP_011562
SP P53044
TPG DAA08146
AlphaFold P53044

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks