BMRB Entry 10036

Title:
Solution structure of mouse CGI-38 protein
Deposition date:
2006-11-01
Original release date:
2008-08-13
Authors:
Kobayashi, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.
Citation:

Citation: Kobayashi, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of mouse CGI-38 protein"  .

Assembly members:

Assembly members:
Protein CGI-38, polymer, 151 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: mouse   Taxonomy ID: 10090   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Mus musculus

Experimental source:

Experimental source:   Production method: cell free synthesis   Vector: P020902-43

Data sets:
Data typeCount
13C chemical shifts629
15N chemical shifts154
1H chemical shifts983

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Protein CGI-381

Entities:

Entity 1, Protein CGI-38 151 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYMETALAALA
2   SERTHRASPILEALAGLYLEUGLUGLUSER
3   PHEARGLYSPHEALAILEHISGLYASPPRO
4   LYSALASERGLYGLNGLUMETASNGLYLYS
5   ASNTRPALALYSLEUCYSLYSASPCYSLYS
6   VALALAASPGLYLYSALAVALTHRGLYTHR
7   ASPVALASPILEVALPHESERLYSVALLYS
8   ALALYSSERALAARGVALILEASNTYRGLU
9   GLUPHELYSLYSALALEUGLUGLULEUALA
10   THRLYSARGPHELYSGLYLYSSERLYSGLU
11   GLUALAPHEASPALAILECYSGLNLEUILE
12   ALAGLYLYSGLUPROALAASNILEGLYVAL
13   THRLYSALALYSTHRGLYGLYALAVALASP
14   ARGLEUTHRASPTHRSERLYSTYRTHRGLY
15   SERHISLYSGLUARGSERGLYPROSERSER
16   GLY

Samples:

sample_1: CGI-38, [U-13C; U-15N], 1.23 mM; Phosphate 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 6.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 15N-separated NOESYsample_1not availablecondition_1
3D 13C-separated NOESYsample_1not availablecondition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B. A. - data analysis

Kujira v0.902, Kobayashi, N. - data analysis

CYANA v1.0.7, Guntert, P. - refinement, structure solution

NMR spectrometers:

  • Bruker AVANCE 800 MHz

Related Database Links:

PDB
DBJ BAB26493 BAB28237 BAE32991 BAE35831
GB AAH10788 AAH87585 EDL11282 EDL92377 EGV97042
REF NP_001009639 NP_001181772 NP_080757 XP_002802578 XP_003262934
SP Q5PPN5 Q9CRB6
AlphaFold Q5PPN5 Q9CRB6

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks