BMRB Entry 10048

Title:
Solution Structure of the UBA Domain of Human Tudor Domain Containing Protein 3
Deposition date:
2006-11-09
Original release date:
2008-08-13
Authors:
Kamatari, Y.; Tochio, N.; Nakanishi, T.; Miyamoto, K.; Li, H.; Kobayashi, N.; Tomizawa, T.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.
Citation:

Citation: Kamatari, Y.; Tochio, N.; Nakanishi, T.; Miyamoto, K.; Li, H.; Kobayashi, N.; Tomizawa, T.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution Structure of the UBA Domain of Human Tudor Domain Containing Protein 3"  .

Assembly members:

Assembly members:
UBA domain, polymer, 63 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: cell free synthesis   Vector: P040301-26

Entity Sequences (FASTA):

Data sets:
Data typeCount
13C chemical shifts237
15N chemical shifts59
1H chemical shifts379

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Tudor domain containing protein 31

Entities:

Entity 1, Tudor domain containing protein 3 63 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYVALASPGLU
2   LYSALALEULYSHISILETHRGLUMETGLY
3   PHESERLYSGLUALASERARGGLNALALEU
4   METASPASNGLYASNASNLEUGLUALAALA
5   LEUASNVALLEULEUTHRSERASNLYSGLN
6   LYSPROVALMETGLYPROPROSERGLYPRO
7   SERSERGLY

Samples:

sample_1: UBA domain, [U-13C; U-15N], 1.04 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 13C-separated NOESYsample_1not availablecondition_1
3D 15N-separated NOESYsample_1not availablecondition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B. A. - data analysis

Kujira v0.8998, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

  • Bruker AVANCE 800 MHz

Related Database Links:

PDB
DBJ BAB14950 BAJ17879 BAK63800
EMBL CAD97894 CAL37786
GB AAH30514 AAH60876 ACC94142 AIC52422 EAW52079
REF NP_001139542 NP_001139543 NP_110421 XP_002808194 XP_003257452
SP Q9H7E2
AlphaFold Q9H7E2

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks