BMRB Entry 10276

Click here to enlarge.

PDB ID: 2d9t
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR10276
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Solution structure of the Tudor domain of Tudor domain containing protein 3 from mouse

Deposition date:

2008-12-15

Original release date:

2009-12-14

Authors:

Li, H.; Tomizawa, T.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Li, H.; Tomizawa, T.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of the Tudor domain of Tudor domain containing protein 3 from mouse" .

Assembly members:

Assembly members:
Tudor domain, polymer, 78 residues, Formula weight is not available

Natural source:

Natural source: Common Name: mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P050214-04

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Tudor domain: GSSGSSGKVWKPGDECFALY WEDNKFYRAEVEALHSSGMT AVVKFTDYGNYEEVLLSNIK PVQTEAWVRDPNSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	321
15N chemical shifts	74
1H chemical shifts	484

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Tudor domain	1

Entities:

Entity 1, Tudor domain 78 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

LYS

VAL

TRP

2

LYS

PRO

GLY

ASP

GLU

CYS

PHE

ALA

LEU

TYR

3

TRP

GLU

ASP

ASN

LYS

PHE

TYR

ARG

ALA

GLU

4

VAL

GLU

ALA

LEU

HIS

SER

GLY

MET

THR

5

ALA

VAL

LYS

PHE

THR

ASP

TYR

GLY

ASN

6

TYR

GLU

VAL

LEU

SER

ASN

ILE

LYS

7

PRO

VAL

GLN

THR

GLU

ALA

TRP

VAL

ARG

ASP

8

PRO

ASN

SER

GLY

PRO

SER

GLY

Samples:

sample_1: Tudor domain, [U-13C; U-15N], 1.22 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20030801, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.932, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	2D9T
DBJ	BAC26033 BAC28263
GB	AAH05670 AAH66144 EDL35743
REF	NP_001240684 NP_766193 XP_006518972 XP_006518973 XP_006518974
SP	Q91W18
AlphaFold	Q91W18