BMRB Entry 30695

Name: Solution structure of delta-theraphotoxin-Hm1b from Heteroscodra maculata
Published: 2020-05-08

Click here to enlarge.

PDB ID: 6v6t
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR30695
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Solution structure of delta-theraphotoxin-Hm1b from Heteroscodra maculata

Deposition date:

2019-12-05

Original release date:

2020-05-08

Authors:

Chin, Y.; Chow, C.; King, G.

Citation:

Citation: Chow, C.; Chin, Y.; Ma, L.; Undheim, E.; Herzig, V.; King, G.. "A selective NaV1.1 activator with potential for treatment of Dravet syndrome epilepsy" Biochem. Pharmacol. ., 113991-113991 (2020).
PubMed: 32335140

Assembly members:

Assembly members:
entity_1, polymer, 35 residues, 3993.551 Da.

Natural source:

Natural source: Common Name: Togo starburst tarantula Taxonomy ID: 268413 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Heteroscodra maculata

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: SECRYLFGGCKTTADCCKHL GCRTDLYYCAWDGTF

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1
spectral_peak_list
- spectral_peak_list_1

Data type	Count
13C chemical shifts	106
15N chemical shifts	37
1H chemical shifts	219

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	entity_1	1

Entities:

Entity 1, entity_1 35 residues - 3993.551 Da.

1

SER

GLU

CYS

ARG

TYR

LEU

PHE

GLY

CYS

2

LYS

THR

ALA

ASP

CYS

LYS

HIS

LEU

3

GLY

CYS

ARG

THR

ASP

LEU

TYR

CYS

ALA

4

TRP

ASP

GLY

THR

PHE

Samples:

sample_1: Hm1b, [U-99% 15N], 325 uM; sodium phosphate 20 mM

sample_conditions_1: ionic strength: 20 mM; pH: 6; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1

Software:

CYANA, Guntert, Mumenthaler and Wuthrich - chemical shift assignment, refinement, structure calculation

CcpNmr Analysis, CCPN - chemical shift assignment, peak picking

TopSpin, Bruker Biospin - processing

NMR spectrometers:

Bruker AVANCE II 600 MHz
Bruker AVANCE III 900 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks