BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 4649

Title: NMR Structure of N-terminal Domain of HTLV-I CA1-134

Authors: Cornilescu, C.; Bouamr, F.; Yao, X.; Carter, C.; Tjandra, N.

Citation: Cornilescu, C.; Bouamr, F.; Yao, X.; Carter, C.; Tjandra, N.. "Structural Analysis of the N-terminal Domain of the Human T-Cell Leukemia Virus Capsid Protein "  J. Mol. Biol. 306, 783-797 (2001).

Assembly members:
HTLV-I CAPSID PROTEIN, polymer, 134 residues, Formula weight is not available

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):
HTLV-I CAPSID PROTEIN: PVMHPHGAPPNHRPWQMKDL QAIKQEVSQAAPGSPQFMQT IRLAVQQFDPTAKDLQDLLQ YLCSSLVASLHHQQLDSLIS EAETRGITSYNPLAGPLRVQ ANNPQQQGLRREYQQLWLAA FAALPGSAKDPSWA

Data sets:
Data typeCount
13C chemical shifts477
1H chemical shifts621
15N chemical shifts121

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1HTLV-I Capsid Protein1

Entities:

Entity 1, HTLV-I Capsid Protein 134 residues - Formula weight is not available

1   PROVALMETHISPROHISGLYALAPROPRO
2   ASNHISARGPROTRPGLNMETLYSASPLEU
3   GLNALAILELYSGLNGLUVALSERGLNALA
4   ALAPROGLYSERPROGLNPHEMETGLNTHR
5   ILEARGLEUALAVALGLNGLNPHEASPPRO
6   THRALALYSASPLEUGLNASPLEULEUGLN
7   TYRLEUCYSSERSERLEUVALALASERLEU
8   HISHISGLNGLNLEUASPSERLEUILESER
9   GLUALAGLUTHRARGGLYILETHRSERTYR
10   ASNPROLEUALAGLYPROLEUARGVALGLN
11   ALAASNASNPROGLNGLNGLNGLYLEUARG
12   ARGGLUTYRGLNGLNLEUTRPLEUALAALA
13   PHEALAALALEUPROGLYSERALALYSASP
14   PROSERTRPALA

Samples:

sample_1: HTLV-I CAPSID PROTEIN, [U-15N; U-13C], 0.6 mM; H2O 95%; D2O 5%

sample_2: HTLV-I CAPSID PROTEIN, [U-15N; U-13C], 0.6 mM; D2O 99.9%

sample_3: HTLV-I CAPSID PROTEIN, [U-15N], 0.6 mM; H2O 95%; D2O 5%

sample_4: HTLV-I CAPSID PROTEIN, [U-15N; U-4% 13C DMPC/DHPC 3:1], 0.6 mM; H2O 95%; D2O 5%

sample_cond_1: pH: 6.0; temperature: 300 K; ionic strength: 10 mM; pressure: 1 atm

sample_cond_2: pH: 6.0; temperature: 302 K; ionic strength: 10 mM; pressure: 1 atm

Experiments:

NameSampleSample stateSample conditions
4D 13C/15N-separated NOESYnot availablenot availablenot available
4D 13C-separated NOESYnot availablenot availablenot available
3D 15N-separated NOESYnot availablenot availablenot available

Software:

X-PLOR v3.840 - refinement

XWINNMR v2.5 - collection

NMRPipe v1.7 - data analysis

PIPP_STAPP v4.2.8 - data analysis

NMR spectrometers:

  • Bruker DMX 800 MHz

Related Database Links:

BMRB 4311
PDB
DBJ BAA02929 BAF31288 BAH85785 BAP28584
EMBL CAA34075 CAA62992
GB AAA85325 AAA85841 AAA96672 AAB20767 AAC00185
REF NP_049558 NP_057860 NP_057861 NP_057862 NP_955618
SP P03345 P03362 P0C209 P0C210 P0C211