BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 5304

Title: Solution Structure of a Mono-heme Ferrocytochrome c from Shewanella putrefaciens and Structural Analysis of Sequence-similar Proteins: Functional Implications   PubMed: 11955059

Authors: Bartalesi, I.; Bertini, I.; Hajieva, P.; Rosato, A.; Vasos, P.

Citation: Bartalesi, I.; Bertini, I.; Hajieva, P.; Rosato, A.; Vasos, P.. "Solution Structure of a Monoheme Ferrocytochrome c from Shewanella putrefaciens and Structural Analysis of Sequence-similar Proteins: Functional Implications "  Biochemistry 41, 5112-5119 (2002).

Assembly members:
ScyA, polymer, 81 residues, Formula weight is not available
HEM, non-polymer, 616.487 Da.

Natural source:   Common Name: Shewanella putrefaciens   Taxonomy ID: 24   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Shewanella putrefaciens

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):
ScyA: ADLQDAEAIYNKACTVCHSM GVAGAPKSHNTADWEPRLAK GVDNLVKSVKTGLNAMPPGG MCTDCTDEDYKAAIEFMSKA K

Data sets:
Data typeCount
1H chemical shifts533
15N chemical shifts82

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1mono-heme c-type cytochrome ScyA1
2HEME C2

Entities:

Entity 1, mono-heme c-type cytochrome ScyA 81 residues - Formula weight is not available

1   ALAASPLEUGLNASPALAGLUALAILETYR
2   ASNLYSALACYSTHRVALCYSHISSERMET
3   GLYVALALAGLYALAPROLYSSERHISASN
4   THRALAASPTRPGLUPROARGLEUALALYS
5   GLYVALASPASNLEUVALLYSSERVALLYS
6   THRGLYLEUASNALAMETPROPROGLYGLY
7   METCYSTHRASPCYSTHRASPGLUASPTYR
8   LYSALAALAILEGLUPHEMETSERLYSALA
9   LYS

Entity 2, HEME C - C34 H32 Fe N4 O4 - 616.487 Da.

1   HEM

Samples:

sample_1: ScyA, [U-15N], 1.5 mM; PROTOPORPHYRIN IX CONTAINING FE 1.5 mM; phosphate buffer 100 mM; H2O 90%; D2O 10%

sample_cond_1: pH: 7.0 na; temperature: 298 K; pressure: 1 atm

Experiments:

NameSampleSample stateSample conditions
3D 15N-separated NOESYsample_1not availablesample_cond_1
3D 15N-separated TOCSYsample_1not availablesample_cond_1
2D NOESYsample_1not availablesample_cond_1
2D TOCSYsample_1not availablesample_cond_1
HNHAsample_1not availablesample_cond_1
HNHBsample_1not availablesample_cond_1
15N-HSQCsample_1not availablesample_cond_1

Software:

DYANA v1.5 - structure solution

AMBER v6 - refinement

NMR spectrometers:

  • Bruker AVANCE 600 MHz

Related Database Links:

REF NP_715904
GenBank AAN53349 AAC02692
PDB