BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 5491

Title: Structural basis for new pattern of the conserved amino acid residues related to chitin-binding in the antifungal peptide from the coconut rhinoceros beetle, Oryctes rhinoceros   PubMed: 12676931

Authors: Hemmi, Hikaru; Ishibashi, Jun; Tomie, Tetsuya; Yamakawa, Minoru

Citation: Hemmi, Hikaru; Ishibashi, Jun; Tomie, Tetsuya; Yamakawa, Minoru. "Structural basis for new pattern of the conserved amino acid residues related to chitin-binding in the antifungal peptide from the coconut rhinoceros beetle, Oryctes rhinoceros"  J. Biol. Chem. 278, 22820-22827 (2003).

Assembly members:
scarabaecin, polymer, 36 residues, Formula weight is not available

Natural source:   Common Name: rhinoceros beetle   Taxonomy ID: 72550   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Oryctes rhinoceros

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
scarabaecin: ELPKLPDDKVLIRSRSNCPK GKVWNGFDCKSPFAFS

Data sets:
Data typeCount
1H chemical shifts274
13C chemical shifts36

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1scarabaecin monomer1

Entities:

Entity 1, scarabaecin monomer 36 residues - Formula weight is not available

1   GLULEUPROLYSLEUPROASPASPLYSVAL
2   LEUILEARGSERARGSERASNCYSPROLYS
3   GLYLYSVALTRPASNGLYPHEASPCYSLYS
4   SERPROPHEALAPHESER

Samples:

sample_1: scarabaecin 3 mM

Ex-cond_1: pH: 2.4; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
1H-1H TOCSYsample_1not availableEx-cond_1
1H-1H DQF-COSYsample_1not availableEx-cond_1
1H-1H NOESYsample_1not availableEx-cond_1
1H-1H E.COSYsample_1not availableEx-cond_1
1H-1H ROESYsample_1not availableEx-cond_1

Software:

XWINNMR v2.6 - acquisition, processing

FELIX v2000 - processing

SPARKY v3.1 - peak assignment

NMR spectrometers:

  • Bruker Avance 800 MHz
  • Bruker Avance 500 MHz

Related Database Links:

PDB
DBJ BAC54897
SP Q86SC0