BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 5681

Title: DIMERIC SOLUTION STRUCTURE OF THE CYCLIC OCTAMER CD(CGCTCATT)   PubMed: 12733903

Authors: Escaja, N.; Gelpi, J.; Orozco, M.; Rico, M.; Pedroso, E.; Gonzalez, C.

Citation: Escaja, N.; Gelpi, J.; Orozco, M.; Rico, M.; Pedroso, E.; Gonzalez, C.. "Four-stranded DNA Structure Stabilized by a Novel C:G:A:T Tetrad"  J. Am. Chem. Soc. 125, 5654-5662 (2003).

Assembly members:
D(CGCTCATT), polymer, 8 residues, Formula weight is not available

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
D(CGCTCATT): CGCTCATT

Data sets:
Data typeCount
1H chemical shifts91
31P chemical shifts8

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1CYCLIC OLIGONUCLEOTIDE D(CGCTCATT), chain 11
2CYCLIC OLIGONUCLEOTIDE D(CGCTCATT), chain 21

Entities:

Entity 1, CYCLIC OLIGONUCLEOTIDE D(CGCTCATT), chain 1 8 residues - Formula weight is not available

1   DCDGDCDTDCDADTDT

Samples:

sample_1: D(CGCTCATT) 5 mM

sample_cond_1: pH: 7.0; pressure: 1 atm; temperature: 278 K

Experiments:

NameSampleSample stateSample conditions
2D NOESYsample_1not availablesample_cond_1
DQF-COSYsample_1not availablesample_cond_1
hetero COSYsample_1not availablesample_cond_1

Software:

MARDIGRAS - iterative matrix relaxation

DYANA v1.5 - structure calculation

AMBER v5.1 - refinement

NMR spectrometers:

  • Bruker DMX 600 MHz

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