BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 5714

Title: 1H Chemical shift assignments of the major conformation of a 11-mer DNA duplex containing an AG Mismatch   PubMed: 12893083

Authors: Sanchez, Ana; Volk, David; Gorenstein, David; Lloyd, R.

Citation: Sanchez, Ana; Volk, David; Gorenstein, David; Lloyd, R.. "Initiation of Repair of A/G Mismatches is Modulated by Sequence Context"  DNA Repair 2, 863-878 (2003).

Assembly members:
DNA Duplex, polymer, 11 residues, Formula weight is not available
DNA Duplex, polymer, 11 residues, Formula weight is not available

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
DNA Duplex: GCTTCAGTCGT
DNA Duplex: ACGACGGAAGC

Data sets:
Data typeCount
1H chemical shifts219

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1Strand A1
2Strand B2

Entities:

Entity 1, Strand A 11 residues - Formula weight is not available

1   DGDCDTDTDCDADGDTDCDG
2   DT

Entity 2, Strand B 11 residues - Formula weight is not available

1   DADCDGDADCDGDGDADADG
2   DC

Samples:

Sample_1: DNA Duplex 1.0 mM; DNA Duplex 1.0 mM; Na Phosphate 25.0 mM; NaCl 50.0 mM; EDTA 1.0 mM

Condition_1: ionic strength: 0.11 mM; pH: 6.8; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D NOEnot availablenot availablenot available

Software:

VNMR v6.1 - processing, volume determination

NMR spectrometers:

  • Varian UNITYplus 750 MHz
  • Varian UNITYplus 600 MHz

Related Database Links: