BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 5903

Title: 1H,13C and 15N backbone resonance assignment of the Hyaluronan-binding domain of CD44   PubMed: 15017146

Authors: Takeda, Mitsuhiro; Terasawa, Hiroaki; Sakakura, Masayosh; Yamaguchi, Yoshiki; Kajiwara, Masahiro; Kawashima, Hiroto; Miyasaka, Masayuki; Shimada, Ichio

Citation: Takeda, Mitsuhiro; Terasawa, Hiroaki; Sakakura, Masayoshi; Yamaguchi, Yoshiki; Kajiwara, Masahiro; Kawashima, Hiroto; Miyasaka, Masayuki; Shimada, Ichio. "Letter to the Editor: 1H, 13C and 15N backbone resonance assignments of the Hyaluronan-binding domain of CD44"  J. Biomol. NMR 29, 97-98 (2004).

Assembly members:
CD44 hyaluronan-binding domain, polymer, 160 residues, Formula weight is not available

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):
CD44 hyaluronan-binding domain: MAQIDLNITCRFAGVFHVEK NGRYSISRTEAADLCKAFNS TLPTMAQMEKALSIGFETCR YGFIEGHVVIPRIHPNSICA ANNTGVYILTSNTSQYDTYC FNASAPPEEDCTSVTDLPNA FDGPITITIVNRDGTRYVQK GEYRTNPEDIYPSNPTDDDV

Data sets:
Data typeCount
13C chemical shifts284
15N chemical shifts144
1H chemical shifts144

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1CD44 hyaluronan binding domain1

Entities:

Entity 1, CD44 hyaluronan binding domain 160 residues - Formula weight is not available

1   METALAGLNILEASPLEUASNILETHRCYS
2   ARGPHEALAGLYVALPHEHISVALGLULYS
3   ASNGLYARGTYRSERILESERARGTHRGLU
4   ALAALAASPLEUCYSLYSALAPHEASNSER
5   THRLEUPROTHRMETALAGLNMETGLULYS
6   ALALEUSERILEGLYPHEGLUTHRCYSARG
7   TYRGLYPHEILEGLUGLYHISVALVALILE
8   PROARGILEHISPROASNSERILECYSALA
9   ALAASNASNTHRGLYVALTYRILELEUTHR
10   SERASNTHRSERGLNTYRASPTHRTYRCYS
11   PHEASNALASERALAPROPROGLUGLUASP
12   CYSTHRSERVALTHRASPLEUPROASNALA
13   PHEASPGLYPROILETHRILETHRILEVAL
14   ASNARGASPGLYTHRARGTYRVALGLNLYS
15   GLYGLUTYRARGTHRASNPROGLUASPILE
16   TYRPROSERASNPROTHRASPASPASPVAL

Samples:

Sample_1: CD44 hyaluronan-binding domain, [U-98% 13C; U-98% 15N], 2.0 mM

EX-condition: pH: 6.7; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
1H-15N HSQCnot availablenot availablenot available
3D HNCAnot availablenot availablenot available
3D HN(CO)CAnot availablenot availablenot available
3D HNCACBnot availablenot availablenot available
3D CBCA(CO)NHnot availablenot availablenot available

Software:

No software information available

NMR spectrometers:

  • Bruker Avance 600 MHz

Related Database Links:

BMRB 6093
PDB
DBJ BAF83113 BAG10625
EMBL CAA38951 CAA40133 CAA47271 CAB61878 CAD89965
GB AAA35674 AAA36138 AAA51950 AAA82949 AAA92921
REF NP_000601 NP_001001389 NP_001001390 NP_001001391 NP_001125856
SP P16070