BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 5998

Title: 1H, 15N and 13C resonance assignments of the ApaG/CorD protein of the phytopathogen Xanthomonas axonopodis pv. citri   PubMed: 15213450

Authors: Katsuyama, Angela; Cicero, Daniel; Spisni, Alberto; Paci, Maurizio; Farah, Chuck; Pertinhez, Thelma

Citation: Katsuyama, Angela; Cicero, Daniel; Spisni, Alberto; Paci, Maurizio; Farah, Chuck; Pertinhez, Thelma. "Letter to the Editor: 1H, 15N and 13C resonance assignments of the ApaG protein of the phytopathogen Xanthomonas axonopodis pv. citri"  J. Biomol. NMR 29, 423-424 (2004).

Assembly members:
ApaG protein, polymer, 127 residues, 14229 Da.

Natural source:   Common Name: Xanthomonas axonopodis pv. citri   Taxonomy ID: 53413   Superkingdom: Eubacteria   Kingdom: not available   Genus/species: Xanthomonas axonopodis

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):
ApaG protein: MQDDPRYRVEVEVSPRFLAH QSTPDEGRYAFAYSIRIQNA GAVPARLVARHWQITDGNGR TEQVDGEGVVGEQPWLRPGE AFHYTSGVLLETEQGQMQGH YDMVADDGTEFIAPIAAFVL SVPRTLH

Data sets:
Data typeCount
1H chemical shifts802
13C chemical shifts523
15N chemical shifts111

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1ApaG monomer1

Entities:

Entity 1, ApaG monomer 127 residues - 14229 Da.

1   METGLNASPASPPROARGTYRARGVALGLU
2   VALGLUVALSERPROARGPHELEUALAHIS
3   GLNSERTHRPROASPGLUGLYARGTYRALA
4   PHEALATYRSERILEARGILEGLNASNALA
5   GLYALAVALPROALAARGLEUVALALAARG
6   HISTRPGLNILETHRASPGLYASNGLYARG
7   THRGLUGLNVALASPGLYGLUGLYVALVAL
8   GLYGLUGLNPROTRPLEUARGPROGLYGLU
9   ALAPHEHISTYRTHRSERGLYVALLEULEU
10   GLUTHRGLUGLNGLYGLNMETGLNGLYHIS
11   TYRASPMETVALALAASPASPGLYTHRGLU
12   PHEILEALAPROILEALAALAPHEVALLEU
13   SERVALPROARGTHRLEUHIS

Samples:

sample_1: ApaG protein, [U-100% 13C; U-100% 15N], 0.5 mM; NaCl 50 mM; NaH2PO4 40 mM

cond_1: pH: 6.8 na; temperature: 303 K; ionic strength: 0.06 M

cond_2: pH: 6.8 na; temperature: 303 K

Experiments:

NameSampleSample stateSample conditions
HNCAnot availablenot availablenot available
HN(CO)CAnot availablenot availablenot available
HNCOnot availablenot availablenot available
HN(CA)COnot availablenot availablenot available
HNCACBnot availablenot availablenot available
CBCACONHnot availablenot availablenot available
HCCH-TOCSYnot availablenot availablenot available
HCCH-COSYnot availablenot availablenot available
HACACOnot availablenot availablenot available
NOESY-CHSQCnot availablenot availablenot available
CHSQCnot availablenot availablenot available
NHSQCnot availablenot availablenot available

Software:

nmrPipe v5.0 -

nmrView v5.0 -

NMR spectrometers:

  • Varian Inova 600 MHz
  • Bruker DRX 700 MHz

Related Database Links:

PDB
DBJ BAE70294
EMBL CAJ22530 CCF67043 CCG37804 CDF60499 CDN18027
GB AAM35750 AAW77003 ACD57769 AEO41147 AGH76402
REF NP_641214 WP_003487449 WP_007965232 WP_010367470 WP_011260169
SP B2SPT2 Q2NZI3 Q3BX83 Q5GWB8 Q8PP26