BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 6007

Title: 1H, 13C and 15N resonance assignment of the Plasminogen Kringle 4 Binding Calcium Free Form of the C-type Lectin-like Domain of Tetranectin

Authors: Nielbo, Steen; Thomsen, Jens; Jensen, Peter; Graversen, Jonas; Etzerodt, Michael; Poulsen, Flemming; Thogersen, Hans

Citation: Nielbo, Steen; Thomsen, Jens; Jensen, Peter; Graversen, Jonas; Etzerodt, Michael; Poulsen, Flemming; Thogersen, Hans. "Structure of the Plasminogen Kringle 4 Binding Calcium Free Form of the C-type Lectin-like Domain of Tetranectin "  Biochemistry 43, 8636-8643 (2004).

Assembly members:
CTLD of tetranectin, polymer, 137 residues, 15122 Da.

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):
CTLD of tetranectin: ALQTVCLKGTKVHMKCFLAF TQTKTFHEASEDCISRGGTL STPQTGSENDALYEYLRQSV GNEAEIWLGLNDMAAEGTWV DMTGARIAYKNWETEITAQP DGGKTENCAVLSGAANGKWF DKRCRDQLPYICQFGIV

Data sets:
Data typeCount
1H chemical shifts681
13C chemical shifts454
15N chemical shifts115

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1tn3 calcium free form1

Entities:

Entity 1, tn3 calcium free form 137 residues - 15122 Da.

1   ALALEUGLNTHRVALCYSLEULYSGLYTHR
2   LYSVALHISMETLYSCYSPHELEUALAPHE
3   THRGLNTHRLYSTHRPHEHISGLUALASER
4   GLUASPCYSILESERARGGLYGLYTHRLEU
5   SERTHRPROGLNTHRGLYSERGLUASNASP
6   ALALEUTYRGLUTYRLEUARGGLNSERVAL
7   GLYASNGLUALAGLUILETRPLEUGLYLEU
8   ASNASPMETALAALAGLUGLYTHRTRPVAL
9   ASPMETTHRGLYALAARGILEALATYRLYS
10   ASNTRPGLUTHRGLUILETHRALAGLNPRO
11   ASPGLYGLYLYSTHRGLUASNCYSALAVAL
12   LEUSERGLYALAALAASNGLYLYSTRPPHE
13   ASPLYSARGCYSARGASPGLNLEUPROTYR
14   ILECYSGLNPHEGLYILEVAL

Samples:

sample_1: CTLD of tetranectin, [U-13C; U-15N], 0.6 mM; EDTA 2 mM; NaN3 1 mM; D2O 10%

cond1: pH: 6.7; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
15N-HSQCnot availablenot availablenot available
HNCOnot availablenot availablenot available
HNCACBnot availablenot availablenot available
HNCAnot availablenot availablenot available
HN(CO)CAnot availablenot availablenot available
CBCACONHnot availablenot availablenot available
HNCACOnot availablenot availablenot available
15N-NOESY-HSQCnot availablenot availablenot available
15N-TOCSY-HSQCnot availablenot availablenot available
13C-NOESY-HSQCnot availablenot availablenot available
HCCH-TOCSYnot availablenot availablenot available

Software:

PRONTO v20020517, Carlsberg A/S - assignment

NMR spectrometers:

  • Varian UnityInova 800 MHz

Related Database Links:

BMRB 6008
PDB
DBJ BAG35029
EMBL CAA45860 CAA50265 CAG46778 CAG46806 CAH18147
GB AAH11024 AAX36546 AAX37102 AIC55255 EAW64735
REF NP_003269 XP_003257014 XP_003309814 XP_003776316 XP_003818539
SP P05452