BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 6085

Title: Solution Structure of hybrid white striped bass hepcidin   PubMed: 15546886

Authors: Babon, Jeff; Singh, Satenda; Westerman, Mark; Pennington, Mike; Norton, Raymond

Citation: Lauth, X.; Babon, Jeff; Stannard, J.; Singh, Satenda; Nizet, V.; Carlberg, J.; Ostland, V.; Pennington, M.; Norton, R.; Westerman, Mark. "Bass hepcidin: Synthesis, solution structure, antimicrobial activities and synergism, and in vivo hepatic response to bacterial infections"  J. Biol. Chem. 280, 9272-9282 (2005).

Assembly members:
hepcidin, polymer, 21 residues, Formula weight is not available

Natural source:   Common Name: hybrid white striped bass   Taxonomy ID: 45352   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Morone chrysops x saxatilis

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
hepcidin: GCRFCCNCCPNMSGCGVCCR F

Data sets:
Data typeCount
1H chemical shifts113
13C chemical shifts59
15N chemical shifts9

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1hepcidin1

Entities:

Entity 1, hepcidin 21 residues - Formula weight is not available

1   GLYCYSARGPHECYSCYSASNCYSCYSPRO
2   ASNMETSERGLYCYSGLYVALCYSCYSARG
3   PHE

Samples:

sample_1: hepcidin3 – 4 mM

condition_1: pH: 4.7; temperature: 298 K; ionic strength: 0 mM

condition_2: pH: 4.3; temperature: 298 K; ionic strength: 0.01 mM

Experiments:

NameSampleSample stateSample conditions
1H-1H TOCSYnot availablenot availablenot available
1H-1H NOESYnot availablenot availablenot available
DQF-COSYnot availablenot availablenot available
E-COSYnot availablenot availablenot available
15N-1H HSQCnot availablenot availablenot available
13C-1H HSQCnot availablenot availablenot available

Software:

xwinnmr -

xeasy -

nmrpipe -

x-plor-NIH -

NMR spectrometers:

  • Bruker Avance 500 MHz
  • Bruker DRX 600 MHz

Related Database Links:

PDB
GB AAM28439 AAM28440 AAZ85124
SP P82951