BMRB Entry 11253

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PDB ID: 1v5o
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11253
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of the Ubiquitin-like Domain from Mouse Hypothetical 1700011N24Rik Protein

Deposition date:

2010-08-09

Original release date:

2011-08-17

Authors:

Zhao, C.; Kigawa, T.; Tomizawa, T.; Koshiba, S.; Inoue, M.; Yokoyama, S.

Citation:

Citation: Zhao, C.; Kigawa, T.; Tomizawa, T.; Koshiba, S.; Inoue, M.; Yokoyama, S.. "Solution Structure of the Ubiquitin-like Domain from Mouse Hypothetical 1700011N24Rik Protein" .

Assembly members:

Assembly members:
Ubiquitin-like Domain, polymer, 102 residues, Formula weight is not available

Natural source:

Natural source: Common Name: house mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P030414-59

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Ubiquitin-like Domain: GSSGSSGMLITVYCVRRDLT EVTFSLQVNPDFELSNFRVL CELESGVPAEEAQIVYMEQL LTDDHCSLGSYGLKDGDMVV LLQKDNVGLRTPGRTPSGPS SG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	385
15N chemical shifts	95
1H chemical shifts	643

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Ubiquitin-like Domain	1

Entities:

Entity 1, Ubiquitin-like Domain 102 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

MET

LEU

ILE

2

THR

VAL

TYR

CYS

VAL

ARG

ASP

LEU

THR

3

GLU

VAL

THR

PHE

SER

LEU

GLN

VAL

ASN

PRO

4

ASP

PHE

GLU

LEU

SER

ASN

PHE

ARG

VAL

LEU

5

CYS

GLU

LEU

GLU

SER

GLY

VAL

PRO

ALA

GLU

6

GLU

ALA

GLN

ILE

VAL

TYR

MET

GLU

GLN

LEU

7

LEU

THR

ASP

HIS

CYS

SER

LEU

GLY

SER

8

TYR

GLY

LEU

LYS

ASP

GLY

ASP

MET

VAL

9

LEU

GLN

LYS

ASP

ASN

VAL

GLY

LEU

ARG

10

THR

PRO

GLY

ARG

THR

PRO

SER

GLY

PRO

SER

11

SER

GLY

Samples:

sample_1: Ubiquitin-like Domain, [U-13C; U-15N], 1.17 mM; Phosphate Na 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 6.0; pressure: 1 atm; temperature: 298.0 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B., A. - data analysis

Kujira v0.860, Kobayashi, N. - data analysis

CYANA v1.0.7, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz