BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 15499

Title: Solution Structure of human NEMO zinc finger   PubMed: 18313693

Authors: Cordier, Florence; Vinolo, Emilie; Veron, Michel; Delepierre, Muriel; Agou, Fabrice

Citation: Cordier, Florence; Vinolo, Emilie; Veron, Michel; Delepierre, Muriel; Agou, Fabrice. "Solution Structure of NEMO Zinc Finger and Impact of an Anhidrotic Ectodermal Dysplasia with Immunodeficiency-related Point Mutation"  J. Mol. Biol. 377, 1419-1432 (2008).

Assembly members:
ZN, non-polymer, 65.409 Da.
NEMO_ZF, polymer, 28 residues, Formula weight is not available

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
NEMO_ZF: SSDFCCPKCQYQAPDMDTLQ IHVMECIE

Data sets:
Data typeCount
1H chemical shifts178

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1ZINC ION1
2NEMO ZF2

Entities:

Entity 1, ZINC ION - Zn - 65.409 Da.

1   ZN

Entity 2, NEMO ZF 28 residues - Formula weight is not available

Residues 3-28 corresponds to residues 394-419 of human NEMO zinc finger. Two Pro in the original sequence are replaced by two Ser (residues 1-2)

1   SERSERASPPHECYSCYSPROLYSCYSGLN
2   TYRGLNALAPROASPMETASPTHRLEUGLN
3   ILEHISVALMETGLUCYSILEGLU

Samples:

sample_1: NEMO ZF 1 mM; ZnS04 2 mM; TCEP 2 mM

sample_conditions_1: ionic strength: 0 M; pH: 7.3; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-1H NOESYsample_1isotropicsample_conditions_1
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D purged-COSYsample_1isotropicsample_conditions_1

Software:

VNMR v6.1C, Varian - collection

NMRPipe v2.2, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRView v5.03, Johnson, One Moon Scientific - chemical shift assignment, data analysis, peak picking

ARIA v1.2, Linge, O, . - refinement, structure solution

NMR spectrometers:

  • Varian INOVA 600 MHz

Related Database Links:

PDB
DBJ BAC29672 BAE32372 BAG10959
EMBL CAB93146
GB AAC36330 AAC40153 AAD12183 AAD38081 AAF99679
REF NP_001093326 NP_001093327 NP_001129539 NP_001138727 NP_001154893
SP O88522 Q6TMG5 Q9Y6K9