BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 21053

Title: Solution structure of fucosylated LacDiNAc (LDNF)   PubMed: 28654715

Authors: Schubert, Mario; Allain, Frederic; Zierke, Mirko

Citation: Aeschbacher, Thomas; Zierke, Mirko; Smiesko, Martin; Collot, Mayeul; Mallet, Jean-Maurice; Ernst, Beat; Allain, Frederic H-T; Schubert, Mario. "A Secondary Structural Element in a Wide Range of Fucosylated Glycoepitopes."  Chemistry 23, 11598-11610 (2017).

Assembly members:
SUGAR_(3-MER), polymer, 4 residues, Formula weight is not available

Natural source:   Common Name: not available   Taxonomy ID: 6183   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Schistosoma mansoni

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
SUGAR_(3-MER): XXXX

Data sets:
Data typeCount
13C chemical shifts22
1H chemical shifts54

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1LDNF1

Entities:

Entity 1, LDNF 4 residues - Formula weight is not available

1   SPMAGA2GFUC

Samples:

sample_1: SUGAR (3-MER) 2.2 mM; D2O 100%

sample_2: SUGAR (3-MER) 2.2 mM; H2O 95%; D2O 5%

sample_conditions_1: pH: 7; temperature: 275 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-13C HSQCsample_1isotropicsample_conditions_1
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D 1H-1H TOCSYsample_2isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_2isotropicsample_conditions_1

Software:

TOPSPIN, Bruker Biospin - collection, processing

SPARKY, Goddard - chemical shift assignment, data analysis

CYANA, Guntert, Mumenthaler and Wuthrich - structure solution

AMBER, Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm - refinement

NMR spectrometers:

  • Bruker Avance 900 MHz

Related Database Links: