BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 4243

Title: Intercalated d(TCCCGTTTCCA) dimer

Authors: GALLEGO, JOSE; CHOU, SHAN-HO; REID, BRIAN

Citation: GALLEGO, JOSE; CHOU, SHAN-HO; REID, BRIAN. "Centromeric pyrimidine strands fold into an intercalated motif by forming a double hairpin with a novel T:G:G:T tetrad: solution structure of the D(TCCCGTTTCCA) dimer"  J. Mol. Biol. 273, 840-856 (1997).

Assembly members:
DNA_1, polymer, 11 residues, Formula weight is not available

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
DNA_1: TCCCGTTTCCA

Data sets:
Data typeCount
1H chemical shifts84
31P chemical shifts10

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1DNA monomer 11
2DNA monomer 21

Entities:

Entity 1, DNA monomer 1 11 residues - Formula weight is not available

1   DTDCDCDCDGDTDTDTDCDC
2   DA

Samples:

sample_one: DNA_1 3.9 mM

sample_conditions_one: ionic strength: 0.2 M; pH: 4.1; temperature: 302 K

Experiments:

NameSampleSample stateSample conditions
1D Hsample_onenot availablesample_conditions_one
1D Psample_onenot availablesample_conditions_one
2D H/H NOESYsample_onenot availablesample_conditions_one
H/H COSYsample_onenot availablesample_conditions_one
H/P HETCORsample_onenot availablesample_conditions_one

Software:

FELIX v2.30 -

DISCOVER -

AMBER v4.0 -

BIRDER - relaxation matrix simulation

NMR spectrometers:

  • Bruker DMX 750 MHz
  • Home-built . 500 MHz

Related Database Links: