BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 4416

Title: Solution-State Structure of a DNA Dodecamer Duplex Containing a Cis-Syn Thymine Cyclobutane Dimer.

Authors: McAteer, K.; Jing, Y.; Kao, J.; Taylor, J.-S.; Kennedy, M.

Citation: McAteer, K.; Jing, Y.; Kao, J.; Taylor, J.-S.; Kennedy, M.. "Solution-state Structure of a DNA Dodecamer Duplex Containing a Cis-Syn Thymine Cyclobutane Dimer, the Major UV photoproduct of DNA."  J. Mol. Biol. 282, 1013-1032 (1998).

Assembly members:
Cis-syn thymine cyclobutane dimer strand 1, polymer, 12 residues, Formula weight is not available
Cis-syn thymine cyclobutane dimer strand 2, polymer, 12 residues, Formula weight is not available

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
Cis-syn thymine cyclobutane dimer strand 1: GCACGAATTAAG
Cis-syn thymine cyclobutane dimer strand 2: CTTAATTCGTGC

Data sets:
Data typeCount
1H chemical shifts193
31P chemical shifts22

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1strand 11
2strand 22

Entities:

Entity 1, strand 1 12 residues - Formula weight is not available

1   DGDCDADCDGDADADTDTDA
2   DADG

Entity 2, strand 2 12 residues - Formula weight is not available

1   DCDTDTDADADTDTDCDGDT
2   DGDC

Samples:

sample_1: Cis-syn thymine cyclobutane dimer 1.2 mM

sample_conditions_1: pH*: 6.6; temperature: 278 K

Experiments:

NameSampleSample stateSample conditions
NOESYsample_1not availablesample_conditions_1
DQF-COSYsample_1not availablesample_conditions_1
HELCOsample_1not availablesample_conditions_1
hetero-TOCSYsample_1not availablesample_conditions_1

Software:

No software information available

NMR spectrometers:

  • Varian Unity Plus 750 MHz
  • Varian Unity Plus 500 MHz

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