BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 4417

Title: 1H, 13C and 15N Chemical Shift Assignments of the Birch Pollen Allergen Bet v 1

Authors: Schweimer, Kristian; Sticht, Heinrich; Boehm, Markus; Roesch, Paul

Citation: Schweimer, K.; Sticht, H.; Nerkamp, J.; Boehm, M.; Breitenbach, M.; Vieths, S.; Roesch, P.. "NMR Spectroscopy Reveals Common Structural Features of the Birch Pollen Allergen Bet v 1 and the Cherry Allergen Pru a 1"  Appl. Magn. Reson. 17, 449-646 (1999).

Assembly members:
Major Pollen Allergen Bet v 1-L, polymer, 159 residues, Formula weight is not available

Natural source:   Common Name: White Birch   Taxonomy ID: 3505   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Betula verrucosa

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
Major Pollen Allergen Bet v 1-L: GVFNYETETTSVIPAARLFK AFILDGDNLFPKVAPQAISS VENIEGNGGPGTIKKISFPE GFPFKYVKDRVDEVDHTNFK YNYSVIEGGPIGDTLEKISN EIKIVATPDGGSILKISNKY HTKGDHEVKAEQVKASKELG ETLLRAVESYLLAHSDAYN

Data sets:
Data typeCount
13C chemical shifts565
15N chemical shifts152
1H chemical shifts932

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Bet v 1-L1

Entities:

Entity 1, Bet v 1-L 159 residues - Formula weight is not available

1   GLYVALPHEASNTYRGLUTHRGLUTHRTHR
2   SERVALILEPROALAALAARGLEUPHELYS
3   ALAPHEILELEUASPGLYASPASNLEUPHE
4   PROLYSVALALAPROGLNALAILESERSER
5   VALGLUASNILEGLUGLYASNGLYGLYPRO
6   GLYTHRILELYSLYSILESERPHEPROGLU
7   GLYPHEPROPHELYSTYRVALLYSASPARG
8   VALASPGLUVALASPHISTHRASNPHELYS
9   TYRASNTYRSERVALILEGLUGLYGLYPRO
10   ILEGLYASPTHRLEUGLULYSILESERASN
11   GLUILELYSILEVALALATHRPROASPGLY
12   GLYSERILELEULYSILESERASNLYSTYR
13   HISTHRLYSGLYASPHISGLUVALLYSALA
14   GLUGLNVALLYSALASERLYSGLULEUGLY
15   GLUTHRLEULEUARGALAVALGLUSERTYR
16   LEULEUALAHISSERASPALATYRASN

Samples:

sample_1: Major Pollen Allergen Bet v 1-L, [U-95% 13C; U-95% 15N], 0.7 – 1.1 mM

sample_2: Major Pollen Allergen Bet v 1-L, [U-98% 15N], 1.0 mM

sample_3: Major Pollen Allergen Bet v 1-L 0.8 mM

sample_conditions_1: ionic strength: 10 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D-HNCOnot availablenot availablesample_conditions_1
3D-HNCAnot availablenot availablesample_conditions_1
3D-CBCA(CO)NHnot availablenot availablesample_conditions_1
3D-HNCACBnot availablenot availablesample_conditions_1
3D-HCCH-COSYnot availablenot availablesample_conditions_1
3D-HCCH-TOCSYnot availablenot availablesample_conditions_1
3D-13C-NOESYHSQCnot availablenot availablesample_conditions_1
3D-15N-NOESYHSQCnot availablenot availablesample_conditions_1
3D-15N-TOCSYHSQC,not availablenot availablesample_conditions_1
3D-HNHAnot availablenot availablesample_conditions_1
2D-NOESY(D2O)not availablenot availablesample_conditions_1
2D-TOCSY(D2O)not availablenot availablesample_conditions_1

Software:

No software information available

NMR spectrometers:

  • Bruker DRX 600 MHz

Related Database Links:

PDB
EMBL CAA04825 CAA05187 CAA05188 CAA05189 CAA07319
GB AAD26561 ABC41579 ABC41580 ABC41581 ABC41611
SP P15494