BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 4506

Title: Solution structure of carnobacteriocin B2   PubMed: 10569926

Authors: Wang, Y.; Henz, M.; Gallagher, N.; Chai, S.; Yan, L.; Gibbs, A.; Stiles, M.; Wishart, D.; Vederas, J.

Citation: Wang, Y.; Henz, M.; Gallagher, N.; Chai, S.; Yan, L.; Gibbs, A.; Stiles, M.; Wishart, D.; Vederas, J.. "Solution structure of carnobacteriocin B2 and implications for structure-activity relationships among type IIa bacteriocins from lactic acid bacteria"  Biochemistry 47, 15438-15447 (1999).

Assembly members:
type IIA bacteriocin carnobacteriocin B2, polymer, 48 residues, Formula weight is not available

Natural source:   Common Name: Carnobacterium piscicola   Taxonomy ID: 2751   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Carnobacterium piscicola

Experimental source:   Production method: purified from natural source

Entity Sequences (FASTA):
type IIA bacteriocin carnobacteriocin B2: VNYGNGVSCSKTKCSVNWGQ AFQERYTAGINSFVSGVASG AGSIGRRP

Data sets:
Data typeCount
1H chemical shifts191
coupling constants8

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1carnobacteriocin B21

Entities:

Entity 1, carnobacteriocin B2 48 residues - Formula weight is not available

1   VALASNTYRGLYASNGLYVALSERCYSSER
2   LYSTHRLYSCYSSERVALASNTRPGLYGLN
3   ALAPHEGLNGLUARGTYRTHRALAGLYILE
4   ASNSERPHEVALSERGLYVALALASERGLY
5   ALAGLYSERILEGLYARGARGPRO

Samples:

sample_1: type IIA bacteriocin carnobacteriocin B2 5 mg; TFE-D3 700 uL

sample_cond_1: pH: 2.8; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D NOESYsample_1not availablesample_cond_1

Software:

X-PLOR v3.85 - structure solution

VNMR v5.1 - processing

NMR spectrometers:

  • Varian Unity 500 MHz
  • Varian Inova 600 MHz

Related Database Links:

PDB
GB AAA72431 AAB18989 AAB81310 KRN88146
REF WP_056998602
SP P38580