BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

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Data types

Data typeRegexpDescription
any.*A catch all for items that may take any form...
atcode[][ _(),.;:"&<>/\{}'`~!@#$%?+=*A-Za-z0-9|^-]*Character data type for atom names ...
binary\n--CIF-BINARY-FORMAT-SECTION--\n\ [][ \n\t()_,.;:"&<>/\{}'`~!@#$%?+=*A-Za-z0-9|^-]*\ \n--CIF-BINARY-FORMAT-SECTION----binary items are presented as MIME-like ascii-encoded sections in an imgCIF. In a CBF, raw octet streams are used to convey the same information.
code[_,.;:"&<>()/\{}'`~!@#$%A-Za-z0-9*|+-]*code item types/single words ...
email[_,.;:"&<>/\{}'`~!@#$%A-Za-z0-9*|+-]*code item types/single words (case insensitive) ...
fax^\+?[0-9A-Za-z.()\s\-/]+$code item types/single words (case insensitive) ...
float-?(([0-9]+)[.]?|([0-9]*[.][0-9]+))([(][0-9]+[)])?([eE][+-]?[0-9]+)?int item types are the subset of numbers that are the floating numbers.
float-range-?(([0-9]+)[.]?|([0-9]*[.][0-9]+))([(][0-9]+[)])?([eE][+-]?[0-9]+)?(--?(([0-9]+)[.]?|([0-9]*[.][0-9]+))([(][0-9]+[)])?([eE][+-]?[0-9]+)?)?int item types are the subset of numbers that are the floating numbers.
framecode[.;:"&<>(){}'`~!$%A-Za-z0-9*|+-][_.;:"&<>(){}'`~!$%A-Za-z0-9*|+-]*A value that points to a saveframe.
idname[_A-Za-z0-9]+idname item types take the form...
int-?[0-9]+int item types are the subset of numbers that are the negative or positive integers.
int-range-?[0-9]+(--?[0-9]+)?int item types are the subset of numbers that are the negative or positive integers with optional range.
line[][ \t_(),.;:"&<>/\{}'`~!@#$%?+=*A-Za-z0-9|^-]*char item types / multi-word items ...
name_[_A-Za-z0-9]+\.[][_A-Za-z0-9%-]+name item types take the form...
phone^\+?[0-9A-Za-z.()\s\-/]+$code item types/single words (case insensitive) ...
symop([1-9]|[1-9][0-9]|1[0-8][0-9]|19[0-2])(_[1-9][1-9][1-9])?symop item types take the form n_klm, where n refers to the symmetry operation that is applied to the coordinates in the ATOM_SITE category identified by _atom_site_label. It must match a number given in _symmetry_equiv_pos_site_id. k, l, and m refer to the translations that are subsequently applied to the symmetry transformed coordinates to generate the atom used. These translations (x,y,z) are related to (k,l,m) by k = 5 + x l = 5 + y m = 5 + z By adding 5 to the translations, the use of negative numbers is avoided.
text[][ \n\t()_,.;:"&<>/\{}'`~!@#$%?+=*A-Za-z0-9|^-]*text item types / multi-line text ...
uchar1[+]?[A-Za-z0-9]data item for 1 character codes
uchar3[+]?[A-Za-z0-9]?[A-Za-z0-9][A-Za-z0-9]data item for 3 character codes
ucode[_,.;:"&<>()/\{}'`~!@#$%A-Za-z0-9*|+-]*code item types/single words (case insensitive) ...
uline[][ \t_(),.;:"&<>/\{}'`~!@#$%?+=*A-Za-z0-9|^-]*char item types / multi-word items (case insensitive)...
yes_no(yes)|(no)data item for boolean codes that have values of 'yes' or 'no'
yyyy-mm-dd[0-9]?[0-9]?[0-9][0-9]-[0-9]?[0-9]-[0-9][0-9]Standard format for CIF dates.
yyyy-mm-dd:hh:mm[0-9]?[0-9]?[0-9][0-9]-[0-9]?[0-9](-[0-9]?[0-9])?(:[0-9]?[0-9]:[0-9][0-9])?Standard format for CIF dates with optional time stamp.