data_17338 ####################### # Entry information # ####################### save_entry_information _Saveframe_category entry_information _Entry_title ; EGF-like Module Pair 3-4 in Vitamin K-dependent Protein S: Modulation of Calcium Affinity of Module 4 by Module 3, and Interaction with Factor X ; _BMRB_accession_number 17338 _BMRB_flat_file_name bmr17338.str _Entry_type original _Submission_date 2010-12-02 _Accession_date 2010-12-02 _Entry_origination author _NMR_STAR_version 2.1.1 _Experimental_method NMR _Details . loop_ _Author_ordinal _Author_family_name _Author_given_name _Author_middle_initials _Author_family_title 1 Stenberg Yvonne . . 2 Muranyi Andreas . . 3 Steen Christina . . 4 Thulin Eva . . 5 Drakenberg Torbjorn . . 6 Stenflo Johan . . stop_ loop_ _Saveframe_category_type _Saveframe_category_type_count binding_constants 1 stop_ loop_ _Revision_date _Revision_keyword _Revision_author _Revision_detail 2012-06-06 original author . stop_ _Original_release_date 2012-06-06 save_ ############################# # Citation for this entry # ############################# save_entry_citation _Saveframe_category entry_citation _Citation_full . _Citation_title 'EGF-like Module Pair 3-4 in Vitamin K-dependent Protein S: Modulation of Calcium Affinity of Module 4 by Module 3 and Interaction with Factor X' _Citation_status published _Citation_type journal _CAS_abstract_code . _MEDLINE_UI_code . _PubMed_ID ? loop_ _Author_ordinal _Author_family_name _Author_given_name _Author_middle_initials _Author_family_title 1 Stenberg Yvonne . . 2 Muranyi Andreas . . 3 Steen Christina . . 4 Thulin Eva . . 5 Drakenberg Torbjorn . . stop_ _Journal_abbreviation 'J. Mol. Biol.' _Journal_volume 293 _Journal_issue . _Journal_CSD . _Book_chapter_title . _Book_volume . _Book_series . _Book_ISBN . _Conference_state_province . _Conference_abstract_number . _Page_first 653 _Page_last 665 _Year 1999 _Details . save_ ################################## # Molecular system description # ################################## save_assembly _Saveframe_category molecular_system _Mol_system_name 'EGF34/CA complex' _Enzyme_commission_number . loop_ _Mol_system_component_name _Mol_label EGF34 $EGF34 CA $CA stop_ _System_molecular_weight . _System_physical_state native _System_oligomer_state ? _System_paramagnetic no _System_thiol_state . _Database_query_date . _Details . save_ ######################## # Monomeric polymers # ######################## save_EGF34 _Saveframe_category monomeric_polymer _Mol_type polymer _Mol_polymer_class protein _Name_common EGF34 _Molecular_mass . _Mol_thiol_state 'not reported' _Details . ############################## # Polymer residue sequence # ############################## _Residue_count 109 _Mol_residue_sequence ; MGHHHHHHHHHHSSGHIEGR HMKDVDECSLKPSICGTAVC KNIPGDFECECPEGYRYNLK SKSCEDIDECSENMCAQLCV NYPGGYTCYCDGKKGFKLAQ DQKSCEVVS ; loop_ _Residue_seq_code _Residue_label 1 MET 2 GLY 3 HIS 4 HIS 5 HIS 6 HIS 7 HIS 8 HIS 9 HIS 10 HIS 11 HIS 12 HIS 13 SER 14 SER 15 GLY 16 HIS 17 ILE 18 GLU 19 GLY 20 ARG 21 HIS 22 MET 23 LYS 24 ASP 25 VAL 26 ASP 27 GLU 28 CYS 29 SER 30 LEU 31 LYS 32 PRO 33 SER 34 ILE 35 CYS 36 GLY 37 THR 38 ALA 39 VAL 40 CYS 41 LYS 42 ASN 43 ILE 44 PRO 45 GLY 46 ASP 47 PHE 48 GLU 49 CYS 50 GLU 51 CYS 52 PRO 53 GLU 54 GLY 55 TYR 56 ARG 57 TYR 58 ASN 59 LEU 60 LYS 61 SER 62 LYS 63 SER 64 CYS 65 GLU 66 ASP 67 ILE 68 ASP 69 GLU 70 CYS 71 SER 72 GLU 73 ASN 74 MET 75 CYS 76 ALA 77 GLN 78 LEU 79 CYS 80 VAL 81 ASN 82 TYR 83 PRO 84 GLY 85 GLY 86 TYR 87 THR 88 CYS 89 TYR 90 CYS 91 ASP 92 GLY 93 LYS 94 LYS 95 GLY 96 PHE 97 LYS 98 LEU 99 ALA 100 GLN 101 ASP 102 GLN 103 LYS 104 SER 105 CYS 106 GLU 107 VAL 108 VAL 109 SER stop_ _Sequence_homology_query_date . _Sequence_homology_query_revised_last_date 2015-10-14 loop_ _Database_name _Database_accession_code _Database_entry_mol_name _Sequence_query_to_submitted_percentage _Sequence_subject_length _Sequence_identity _Sequence_positive _Sequence_homology_expectation_value BMRB 17462 EGF 100.00 109 100.00 100.00 4.63e-72 BMRB 4729 "EGF-like module pair 3-4 from human vitamin K-dependent protein S" 81.65 89 100.00 100.00 5.26e-57 PDB 1Z6C "Solution Structure Of An Egf Pair (Egf34) From Vitamin K- Dependent Protein S" 79.82 87 100.00 100.00 2.85e-55 REF XP_009444184 "PREDICTED: LOW QUALITY PROTEIN: vitamin K-dependent protein S-like [Pan troglodytes]" 79.82 671 97.70 97.70 5.27e-50 REF XP_014199791 "PREDICTED: vitamin K-dependent protein S [Pan paniscus]" 79.82 676 100.00 100.00 6.73e-53 stop_ save_ ############# # Ligands # ############# save_CA _Saveframe_category ligand _Mol_type non-polymer _Name_common "CA (CALCIUM ION)" _BMRB_code . _PDB_code CA _Molecular_mass 40.078 _Mol_charge 2 _Mol_paramagnetic no _Mol_aromatic no _Details ; Information obtained from PDB's Chemical Component Dictionary at http://wwpdb-remediation.rutgers.edu/downloads.html Downloaded on Tue Jun 9 13:21:54 2009 ; loop_ _Atom_name _PDB_atom_name _Atom_type _Atom_chirality _Atom_charge _Atom_oxidation_number _Atom_unpaired_electrons CA CA CA . 2 . ? stop_ _Mol_thiol_state 'not present' _Sequence_homology_query_date . save_ #################### # Natural source # #################### save_natural_source _Saveframe_category natural_source loop_ _Mol_label _Organism_name_common _NCBI_taxonomy_ID _Superkingdom _Kingdom _Genus _Species $EGF34 Human 9606 Eukaryota Metazoa Homo sapiens stop_ save_ ######################### # Experimental source # ######################### save_experimental_source _Saveframe_category experimental_source loop_ _Mol_label _Production_method _Host_organism_name_common _Genus _Species _Strain _Variant _Vector_name $EGF34 'recombinant technology' E.coli Escherichia coli BL21 DE3 'pET 16b' stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_1 _Saveframe_category sample _Sample_type solution _Details 'CaCl2 was titrated into solution in 2-5ul aliquots' loop_ _Mol_label _Concentration_value _Concentration_value_units _Concentration_min_value _Concentration_max_value _Isotopic_labeling $EGF34 0.214 mM . . [U-15N] 'sodium chloride' 150 mM . . 'natural abundance' 'sodium azide' 0.1 mM . . 'natural abundance' DSS 1 mM . . 'natural abundance' $CA . M 0.040 0.200 'natural abundance' H2O 90 % . . 'natural abundance' D2O 10 % . . 'natural abundance' stop_ save_ ############################ # Computer software used # ############################ save_Felix _Saveframe_category software _Name FELIX _Version 97 loop_ _Vendor _Address _Electronic_address 'Accelrys Software Inc.' . . stop_ loop_ _Task processing stop_ _Details . save_ ######################### # Experimental detail # ######################### ################################## # NMR Spectrometer definitions # ################################## save_spectrometer_1 _Saveframe_category NMR_spectrometer _Manufacturer Varian _Model INOVA _Field_strength 600 _Details . save_ ############################# # NMR applied experiments # ############################# save_2D_1H-15N_HSQC_1 _Saveframe_category NMR_applied_experiment _Experiment_name '2D 1H-15N HSQC' _Sample_label $sample_1 save_ ####################### # Sample conditions # ####################### save_sample_conditions_1 _Saveframe_category sample_conditions _Details . loop_ _Variable_type _Variable_value _Variable_value_error _Variable_value_units pH 7.5 . pH pressure 1 . atm temperature 300 . K stop_ save_