data_25206 ####################### # Entry information # ####################### save_entry_information _Saveframe_category entry_information _Entry_title ; Structural modifications to a high-activity binding peptide located whitin the PfEMP1 NTS domain induce protection against P. falciparum malaria in Aotus monkeys ; _BMRB_accession_number 25206 _BMRB_flat_file_name bmr25206.str _Entry_type original _Submission_date 2014-09-08 _Accession_date 2014-09-08 _Entry_origination author _NMR_STAR_version 2.1.1 _Experimental_method NMR _Details . loop_ _Author_ordinal _Author_family_name _Author_given_name _Author_middle_initials _Author_family_title 1 Curtidor Hernando . . 2 Torres 'Mary Helena' . . 3 Alba 'Martha Patricia' . . 4 Patarroyo 'Manuel Elkin' . . stop_ loop_ _Saveframe_category_type _Saveframe_category_type_count assigned_chemical_shifts 1 stop_ loop_ _Data_type _Data_type_count "1H chemical shifts" 95 stop_ loop_ _Revision_date _Revision_keyword _Revision_author _Revision_detail 2015-09-21 original BMRB . stop_ _Original_release_date 2015-09-21 save_ ############################# # Citation for this entry # ############################# save_entry_citation _Saveframe_category entry_citation _Citation_full . _Citation_title ; Structural modifications to a high-activity binding peptide located whitin the PfEMP1 NTS domain induce protection against P. falciparum malaria in Aotus monkeys ; _Citation_status published _Citation_type journal _CAS_abstract_code . _MEDLINE_UI_code . _PubMed_ID ? loop_ _Author_ordinal _Author_family_name _Author_given_name _Author_middle_initials _Author_family_title 1 Curtidor Hernando . . 2 Torres 'Mary Helena' . . 3 Alba 'Martha Patricia' . . 4 Patarroyo 'Manuel Elkin' . . stop_ _Journal_abbreviation 'Biol. Chem.' _Journal_volume 388 _Journal_issue . _Journal_CSD . _Book_chapter_title . _Book_volume . _Book_series . _Book_ISBN . _Conference_state_province . _Conference_abstract_number . _Page_first 25 _Page_last 36 _Year 2007 _Details . save_ ################################## # Molecular system description # ################################## save_assembly _Saveframe_category molecular_system _Mol_system_name 'high-activity binding peptide 6505' _Enzyme_commission_number . loop_ _Mol_system_component_name _Mol_label entity $entity stop_ _System_molecular_weight . _System_physical_state native _System_oligomer_state ? _System_paramagnetic no _System_thiol_state . _Database_query_date . _Details . save_ ######################## # Monomeric polymers # ######################## save_entity _Saveframe_category monomeric_polymer _Mol_type polymer _Mol_polymer_class protein _Name_common entity _Molecular_mass 2401.756 _Mol_thiol_state 'not present' _Details . ############################## # Polymer residue sequence # ############################## _Residue_count 20 _Mol_residue_sequence ; ESAKHMFDRIGKDVYDKVKE ; loop_ _Residue_seq_code _Residue_author_seq_code _Residue_label 1 1 GLU 2 2 SER 3 3 ALA 4 4 LYS 5 5 HIS 6 6 MET 7 7 PHE 8 8 ASP 9 9 ARG 10 10 ILE 11 11 GLY 12 12 LYS 13 13 ASP 14 14 VAL 15 15 TYR 16 16 ASP 17 17 LYS 18 18 VAL 19 19 LYS 20 20 GLU stop_ _Sequence_homology_query_date . _Sequence_homology_query_revised_last_date 2015-11-25 loop_ _Database_name _Database_accession_code _Database_entry_mol_name _Sequence_query_to_submitted_percentage _Sequence_subject_length _Sequence_identity _Sequence_positive _Sequence_homology_expectation_value PDB 2MUD "Structural Modifications To A High-activity Binding Peptide Located Whitin The Pfemp1 Nts Domain Induce Protection Against P. F" 100.00 22 100.00 100.00 5.86e-04 GB AAA75396 "variant-specific surface protein [Plasmodium falciparum]" 100.00 3078 100.00 100.00 3.19e-02 GB ABM88759 "erythrocyte membrane protein 1 [Plasmodium falciparum]" 100.00 3053 100.00 100.00 3.93e-02 GB ETW19400 "hypothetical protein PFFVO_01698, partial [Plasmodium falciparum Vietnam Oak-Knoll (FVO)]" 100.00 2621 100.00 100.00 3.68e-02 GB ETW37509 "hypothetical protein PFTANZ_01791 [Plasmodium falciparum Tanzania (2000708)]" 100.00 2518 100.00 100.00 3.88e-02 GB KOB84712 "hypothetical protein PFDG_00026 [Plasmodium falciparum Dd2]" 100.00 3064 100.00 100.00 3.93e-02 stop_ save_ #################### # Natural source # #################### save_natural_source _Saveframe_category natural_source loop_ _Mol_label _Organism_name_common _NCBI_taxonomy_ID _Superkingdom _Kingdom _Genus _Species $entity . . . . . . stop_ save_ ######################### # Experimental source # ######################### save_experimental_source _Saveframe_category experimental_source loop_ _Mol_label _Production_method _Host_organism_name_common _Genus _Species _Strain _Vector_name $entity 'chemical synthesis' . . . . . stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_1 _Saveframe_category sample _Sample_type solution _Details 'trifluoroethanol/water 30%/70%' loop_ _Mol_label _Concentration_value _Concentration_value_units _Concentration_min_value _Concentration_max_value _Isotopic_labeling $entity . mM 8 10 'natural abundance' H2O 70 % . . 'natural abundance' trifluoroethanol 30 % . . 'natural abundance' stop_ save_ ############################ # Computer software used # ############################ save_InsightII _Saveframe_category software _Name InsightII _Version . loop_ _Vendor _Address _Electronic_address 'Accelrys Software Inc.' . . stop_ loop_ _Task 'geometry optimization' refinement stop_ _Details . save_ ######################### # Experimental detail # ######################### ################################## # NMR Spectrometer definitions # ################################## save_spectrometer_1 _Saveframe_category NMR_spectrometer _Manufacturer Bruker _Model DRX _Field_strength 500 _Details . save_ ############################# # NMR applied experiments # ############################# save_2D_DQF-COSY_1 _Saveframe_category NMR_applied_experiment _Experiment_name '2D DQF-COSY' _Sample_label $sample_1 save_ save_2D_1H-1H_TOCSY_2 _Saveframe_category NMR_applied_experiment _Experiment_name '2D 1H-1H TOCSY' _Sample_label $sample_1 save_ save_2D_1H-1H_NOESY_3 _Saveframe_category NMR_applied_experiment _Experiment_name '2D 1H-1H NOESY' _Sample_label $sample_1 save_ ####################### # Sample conditions # ####################### save_sample_conditions_1 _Saveframe_category sample_conditions _Details . loop_ _Variable_type _Variable_value _Variable_value_error _Variable_value_units pH 3.7 . pH pressure 1 . atm temperature 295 . K stop_ save_ #################### # NMR parameters # #################### ############################## # Assigned chemical shifts # ############################## ################################ # Chemical shift referencing # ################################ save_chemical_shift_reference_1 _Saveframe_category chemical_shift_reference _Details . loop_ _Mol_common_name _Atom_type _Atom_isotope_number _Atom_group _Chem_shift_units _Chem_shift_value _Reference_method _Reference_type _External_reference_sample_geometry _External_reference_location _External_reference_axis _Indirect_shift_ratio DSS C 13 'methyl protons' ppm 0.00 na indirect . . . 0.251449530 DSS H 1 'methyl protons' ppm 0.00 internal direct . . . 1.000000000 DSS N 15 'methyl protons' ppm 0.00 na indirect . . . 0.101329118 DSS P 31 'methyl protons' ppm 0.00 na indirect . . . 0.404808636 stop_ save_ ################################### # Assigned chemical shift lists # ################################### ################################################################### # Chemical Shift Ambiguity Index Value Definitions # # # # The values other than 1 are used for those atoms with different # # chemical shifts that cannot be assigned to stereospecific atoms # # or to specific residues or chains. # # # # Index Value Definition # # # # 1 Unique (including isolated methyl protons, # # geminal atoms, and geminal methyl # # groups with identical chemical shifts) # # (e.g. ILE HD11, HD12, HD13 protons) # # 2 Ambiguity of geminal atoms or geminal methyl # # proton groups (e.g. ASP HB2 and HB3 # # protons, LEU CD1 and CD2 carbons, or # # LEU HD11, HD12, HD13 and HD21, HD22, # # HD23 methyl protons) # # 3 Aromatic atoms on opposite sides of # # symmetrical rings (e.g. TYR HE1 and HE2 # # protons) # # 4 Intraresidue ambiguities (e.g. LYS HG and # # HD protons or TRP HZ2 and HZ3 protons) # # 5 Interresidue ambiguities (LYS 12 vs. LYS 27) # # 6 Intermolecular ambiguities (e.g. ASP 31 CA # # in monomer 1 and ASP 31 CA in monomer 2 # # of an asymmetrical homodimer, duplex # # DNA assignments, or other assignments # # that may apply to atoms in one or more # # molecule in the molecular assembly) # # 9 Ambiguous, specific ambiguity not defined # # # ################################################################### save_assigned_chem_shift_list_1 _Saveframe_category assigned_chemical_shifts _Details . loop_ _Experiment_label '2D 1H-1H TOCSY' '2D 1H-1H NOESY' stop_ loop_ _Sample_label $sample_1 stop_ _Sample_conditions_label $sample_conditions_1 _Chem_shift_reference_set_label $chemical_shift_reference_1 _Mol_system_component_name entity _Text_data_format . _Text_data . loop_ _Atom_shift_assign_ID _Residue_author_seq_code _Residue_seq_code _Residue_label _Atom_name _Atom_type _Chem_shift_value _Chem_shift_value_error _Chem_shift_ambiguity_code 1 1 1 GLU HA H 4.140 0.02 . 2 1 1 GLU HB2 H 1.990 0.02 . 3 1 1 GLU HB3 H 1.990 0.02 . 4 1 1 GLU HG2 H 2.370 0.02 . 5 1 1 GLU HG3 H 2.370 0.02 . 6 1 1 GLU H H 8.340 0.02 . 7 2 2 SER H H 8.360 0.02 . 8 2 2 SER HA H 4.290 0.02 . 9 2 2 SER HB2 H 3.860 0.02 . 10 2 2 SER HB3 H 3.980 0.02 . 11 3 3 ALA H H 8.170 0.02 . 12 3 3 ALA HA H 4.070 0.02 . 13 3 3 ALA HB H 1.350 0.02 . 14 4 4 LYS H H 7.880 0.02 . 15 4 4 LYS HA H 3.990 0.02 . 16 4 4 LYS HB2 H 1.720 0.02 . 17 4 4 LYS HB3 H 1.720 0.02 . 18 5 5 HIS H H 7.970 0.02 . 19 5 5 HIS HA H 4.500 0.02 . 20 5 5 HIS HB2 H 3.290 0.02 . 21 5 5 HIS HB3 H 3.200 0.02 . 22 5 5 HIS HD2 H 7.270 0.02 . 23 5 5 HIS HE1 H 7.980 0.02 . 24 6 6 MET H H 8.020 0.02 . 25 6 6 MET HA H 4.140 0.02 . 26 6 6 MET HB2 H 1.950 0.02 . 27 6 6 MET HB3 H 1.950 0.02 . 28 7 7 PHE H H 8.290 0.02 . 29 7 7 PHE HA H 4.350 0.02 . 30 7 7 PHE HB2 H 3.020 0.02 . 31 7 7 PHE HB3 H 3.200 0.02 . 32 7 7 PHE HD1 H 6.960 0.02 . 33 7 7 PHE HD2 H 6.960 0.02 . 34 7 7 PHE HE1 H 7.170 0.02 . 35 7 7 PHE HE2 H 7.170 0.02 . 36 8 8 ASP H H 8.180 0.02 . 37 8 8 ASP HA H 4.400 0.02 . 38 8 8 ASP HB2 H 2.810 0.02 . 39 8 8 ASP HB3 H 2.670 0.02 . 40 9 9 ARG H H 7.860 0.02 . 41 9 9 ARG HA H 4.070 0.02 . 42 9 9 ARG HB2 H 1.810 0.02 . 43 9 9 ARG HB3 H 1.810 0.02 . 44 10 10 ILE H H 8.050 0.02 . 45 10 10 ILE HA H 3.900 0.02 . 46 10 10 ILE HB H 1.850 0.02 . 47 10 10 ILE HG2 H 0.840 0.02 . 48 10 10 ILE HD1 H 0.760 0.02 . 49 11 11 GLY H H 8.190 0.02 . 50 11 11 GLY HA2 H 3.710 0.02 . 51 11 11 GLY HA3 H 3.830 0.02 . 52 12 12 LYS H H 7.850 0.02 . 53 12 12 LYS HA H 4.060 0.02 . 54 12 12 LYS HB2 H 1.850 0.02 . 55 12 12 LYS HB3 H 1.850 0.02 . 56 13 13 ASP H H 8.070 0.02 . 57 13 13 ASP HA H 4.470 0.02 . 58 13 13 ASP HB2 H 2.860 0.02 . 59 13 13 ASP HB3 H 2.730 0.02 . 60 14 14 VAL H H 8.100 0.02 . 61 14 14 VAL HA H 3.630 0.02 . 62 14 14 VAL HB H 2.060 0.02 . 63 14 14 VAL HG1 H 0.780 0.02 . 64 14 14 VAL HG2 H 0.900 0.02 . 65 15 15 TYR H H 8.070 0.02 . 66 15 15 TYR HA H 4.070 0.02 . 67 15 15 TYR HB2 H 3.020 0.02 . 68 15 15 TYR HB3 H 3.080 0.02 . 69 15 15 TYR HD1 H 7.060 0.02 . 70 15 15 TYR HD2 H 7.060 0.02 . 71 15 15 TYR HE1 H 6.730 0.02 . 72 15 15 TYR HE2 H 6.730 0.02 . 73 16 16 ASP H H 8.320 0.02 . 74 16 16 ASP HA H 4.300 0.02 . 75 16 16 ASP HB2 H 2.850 0.02 . 76 16 16 ASP HB3 H 2.690 0.02 . 77 17 17 LYS H H 7.780 0.02 . 78 17 17 LYS HA H 4.070 0.02 . 79 17 17 LYS HB2 H 1.880 0.02 . 80 17 17 LYS HB3 H 1.880 0.02 . 81 18 18 VAL H H 8.160 0.02 . 82 18 18 VAL HA H 3.730 0.02 . 83 18 18 VAL HB H 2.060 0.02 . 84 18 18 VAL HG1 H 0.920 0.02 . 85 18 18 VAL HG2 H 0.820 0.02 . 86 19 19 LYS H H 8.040 0.02 . 87 19 19 LYS HA H 3.990 0.02 . 88 19 19 LYS HB2 H 1.620 0.02 . 89 19 19 LYS HB3 H 1.620 0.02 . 90 20 20 GLU H H 7.740 0.02 . 91 20 20 GLU HA H 4.140 0.02 . 92 20 20 GLU HB2 H 2.020 0.02 . 93 20 20 GLU HB3 H 2.100 0.02 . 94 20 20 GLU HG2 H 2.470 0.02 . 95 20 20 GLU HG3 H 2.470 0.02 . stop_ save_