data_30261 ####################### # Entry information # ####################### save_entry_information _Saveframe_category entry_information _Entry_title ; HnRNP A1 Alters the Conformation of a Conserved Enterovirus IRES Domain to Stimulate Viral Translation ; _BMRB_accession_number 30261 _BMRB_flat_file_name bmr30261.str _Entry_type original _Submission_date 2017-03-01 _Accession_date 2017-03-01 _Entry_origination author _NMR_STAR_version 2.1.1 _Experimental_method NMR _Details . loop_ _Author_ordinal _Author_family_name _Author_given_name _Author_middle_initials _Author_family_title 1 Tolbert M. . . 2 Morgan C. E. . 3 Tolbert B. S. . stop_ loop_ _Saveframe_category_type _Saveframe_category_type_count assigned_chemical_shifts 1 stop_ loop_ _Data_type _Data_type_count "1H chemical shifts" 131 stop_ loop_ _Revision_date _Revision_keyword _Revision_author _Revision_detail 2017-11-22 update BMRB 'update entry citation' 2017-07-07 original author 'original release' stop_ _Original_release_date 2017-07-06 save_ ############################# # Citation for this entry # ############################# save_citation_1 _Saveframe_category entry_citation _Citation_full . _Citation_title ; HnRNP A1 Alters the Structure of a Conserved Enterovirus IRES Domain to Stimulate Viral Translation. ; _Citation_status published _Citation_type journal _CAS_abstract_code . _MEDLINE_UI_code . _PubMed_ID 28625847 loop_ _Author_ordinal _Author_family_name _Author_given_name _Author_middle_initials _Author_family_title 1 Tolbert M. . . 2 Morgan C. E. . 3 Pollum M. . . 4 Crespo-Hernandez C. E. . 5 Li M. L. . 6 Brewer G. . . 7 Tolbert B. S. . stop_ _Journal_abbreviation 'J. Mol. Biol.' _Journal_volume 429 _Journal_issue 19 _Journal_ASTM JMOBAK _Journal_ISSN 1089-8638 _Journal_CSD 0070 _Book_chapter_title . _Book_volume . _Book_series . _Book_ISBN . _Conference_state_province . _Conference_abstract_number . _Page_first 2841 _Page_last 2858 _Year 2017 _Details . save_ ################################## # Molecular system description # ################################## save_assembly _Saveframe_category molecular_system _Mol_system_name 'RNA (41-MER)' _Enzyme_commission_number . loop_ _Mol_system_component_name _Mol_label entity_1 $entity_1 stop_ _System_molecular_weight . _System_oligomer_state ? _System_paramagnetic no _System_thiol_state 'not present' _Database_query_date . _Details . save_ ######################## # Monomeric polymers # ######################## save_entity_1 _Saveframe_category monomeric_polymer _Mol_type polymer _Mol_polymer_class RNA _Name_common entity_1 _Molecular_mass 13140.855 _Mol_thiol_state 'not present' _Details . ############################## # Polymer residue sequence # ############################## _Residue_count 41 _Mol_residue_sequence ; GGAUCAAUAGCAGGUGUGGC ACACCAGUCAUACCUUGAUC C ; loop_ _Residue_seq_code _Residue_label 1 G 2 G 3 A 4 U 5 C 6 A 7 A 8 U 9 A 10 G 11 C 12 A 13 G 14 G 15 U 16 G 17 U 18 G 19 G 20 C 21 A 22 C 23 A 24 C 25 C 26 A 27 G 28 U 29 C 30 A 31 U 32 A 33 C 34 C 35 U 36 U 37 G 38 A 39 U 40 C 41 C stop_ _Sequence_homology_query_date . _Sequence_homology_query_revised_last_date . save_ #################### # Natural source # #################### save_natural_source _Saveframe_category natural_source loop_ _Mol_label _Organism_name_common _NCBI_taxonomy_ID _Superkingdom _Kingdom _Genus _Species $entity_1 'Enterovirus A71' 39054 Viruses . Enterovirus A71 stop_ save_ ######################### # Experimental source # ######################### save_experimental_source _Saveframe_category experimental_source loop_ _Mol_label _Production_method _Host_organism_name_common _Genus _Species _Strain _Vector_name $entity_1 'chemical synthesis' . . . . . stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_1 _Saveframe_category sample _Sample_type solution _Details '180.0 uM Selective Deuteration; EQUIMOLAR MIX:ATP, GTP, CTP, UTP rNTP, 100% D2O' loop_ _Mol_label _Concentration_value _Concentration_value_units _Isotopic_labeling $entity_1 180.0 uM 'Selective Deuteration; EQUIMOLAR MIX:ATP, GTP, CTP, UTP' stop_ save_ save_sample_2 _Saveframe_category sample _Sample_type solution _Details '300.0 uM Fully protonated rNTP, 100% D2O' loop_ _Mol_label _Concentration_value _Concentration_value_units _Isotopic_labeling $entity_1 300.0 uM 'Fully protonated' stop_ save_ save_sample_3 _Saveframe_category sample _Sample_type solution _Details '100.0 uM Fully protonated rNTP, 100% D2O' loop_ _Mol_label _Concentration_value _Concentration_value_units _Isotopic_labeling $entity_1 100.0 uM 'Fully protonated' stop_ save_ save_sample_4 _Saveframe_category sample _Sample_type solution _Details '300.0 uM [U-13C]-Gua rNTP, 100% D2O' loop_ _Mol_label _Concentration_value _Concentration_value_units _Isotopic_labeling $entity_1 300.0 uM [U-13C]-Gua stop_ save_ ############################ # Computer software used # ############################ save_software_1 _Saveframe_category software _Name AMBER _Version . loop_ _Vendor _Address _Electronic_address 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' . . stop_ loop_ _Task refinement stop_ _Details . save_ save_software_2 _Saveframe_category software _Name NMRDraw _Version . loop_ _Vendor _Address _Electronic_address 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' . . stop_ loop_ _Task processing stop_ _Details . save_ save_software_3 _Saveframe_category software _Name NMRPipe _Version . loop_ _Vendor _Address _Electronic_address 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' . . stop_ loop_ _Task processing stop_ _Details . save_ save_software_4 _Saveframe_category software _Name NMRView _Version . loop_ _Vendor _Address _Electronic_address 'Johnson, One Moon Scientific' . . stop_ loop_ _Task 'chemical shift assignment' stop_ _Details . save_ save_software_5 _Saveframe_category software _Name TOPSPIN _Version . loop_ _Vendor _Address _Electronic_address 'Bruker Biospin' . . stop_ loop_ _Task collection stop_ _Details . save_ save_software_6 _Saveframe_category software _Name 'X-PLOR NIH' _Version . loop_ _Vendor _Address _Electronic_address 'Schwieters, Kuszewski, Tjandra and Clore' . . stop_ loop_ _Task 'structure calculation' stop_ _Details . save_ ######################### # Experimental detail # ######################### ################################## # NMR Spectrometer definitions # ################################## save_NMR_spectrometer_1 _Saveframe_category NMR_spectrometer _Manufacturer Bruker _Model Avance _Field_strength 900 _Details . save_ save_NMR_spectrometer_2 _Saveframe_category NMR_spectrometer _Manufacturer Bruker _Model Avance _Field_strength 800 _Details . save_ ############################# # NMR applied experiments # ############################# save_2D_1H-1H_NOESY_1 _Saveframe_category NMR_applied_experiment _Experiment_name '2D 1H-1H NOESY' _Sample_label $sample_1 save_ save_2D_1H-13C_HMQC_2 _Saveframe_category NMR_applied_experiment _Experiment_name '2D 1H-13C HMQC' _Sample_label $sample_4 save_ save_2D_1H-1H_TOCSY_3 _Saveframe_category NMR_applied_experiment _Experiment_name '2D 1H-1H TOCSY' _Sample_label $sample_2 save_ save_2D_1H-1H_NOESY_4 _Saveframe_category NMR_applied_experiment _Experiment_name '2D 1H-1H NOESY' _Sample_label $sample_3 save_ ####################### # Sample conditions # ####################### save_sample_conditions_1 _Saveframe_category sample_conditions _Details . loop_ _Variable_type _Variable_value _Variable_value_error _Variable_value_units 'ionic strength' 10 . mM pH 6.5 . pH pressure 1 . . temperature 303 . K stop_ save_ #################### # NMR parameters # #################### ############################## # Assigned chemical shifts # ############################## ################################ # Chemical shift referencing # ################################ save_chem_shift_reference_1 _Saveframe_category chemical_shift_reference _Details . loop_ _Mol_common_name _Atom_type _Atom_isotope_number _Atom_group _Chem_shift_units _Chem_shift_value _Reference_method _Reference_type _External_reference_sample_geometry _External_reference_location _External_reference_axis _Indirect_shift_ratio DSS C 13 'methyl protons' ppm 0.000 internal indirect . . . 0.25144953 DSS H 1 'methyl protons' ppm 0.000 internal direct . . . 1.0 stop_ save_ ################################### # Assigned chemical shift lists # ################################### ################################################################### # Chemical Shift Ambiguity Index Value Definitions # # # # The values other than 1 are used for those atoms with different # # chemical shifts that cannot be assigned to stereospecific atoms # # or to specific residues or chains. # # # # Index Value Definition # # # # 1 Unique (including isolated methyl protons, # # geminal atoms, and geminal methyl # # groups with identical chemical shifts) # # (e.g. ILE HD11, HD12, HD13 protons) # # 2 Ambiguity of geminal atoms or geminal methyl # # proton groups (e.g. ASP HB2 and HB3 # # protons, LEU CD1 and CD2 carbons, or # # LEU HD11, HD12, HD13 and HD21, HD22, # # HD23 methyl protons) # # 3 Aromatic atoms on opposite sides of # # symmetrical rings (e.g. TYR HE1 and HE2 # # protons) # # 4 Intraresidue ambiguities (e.g. LYS HG and # # HD protons or TRP HZ2 and HZ3 protons) # # 5 Interresidue ambiguities (LYS 12 vs. LYS 27) # # 6 Intermolecular ambiguities (e.g. ASP 31 CA # # in monomer 1 and ASP 31 CA in monomer 2 # # of an asymmetrical homodimer, duplex # # DNA assignments, or other assignments # # that may apply to atoms in one or more # # molecule in the molecular assembly) # # 9 Ambiguous, specific ambiguity not defined # # # ################################################################### save_assigned_chemical_shifts_1 _Saveframe_category assigned_chemical_shifts _Details . loop_ _Experiment_label '2D 1H-1H NOESY' '2D 1H-13C HMQC' '2D 1H-1H TOCSY' stop_ loop_ _Sample_label $sample_1 $sample_4 $sample_2 $sample_3 stop_ _Sample_conditions_label $sample_conditions_1 _Chem_shift_reference_set_label $chem_shift_reference_1 _Mol_system_component_name entity_1 _Text_data_format . _Text_data . loop_ _Atom_shift_assign_ID _Residue_author_seq_code _Residue_seq_code _Residue_label _Atom_name _Atom_type _Chem_shift_value _Chem_shift_value_error _Chem_shift_ambiguity_code 1 1 1 G H1' H 5.79874 . . 2 1 1 G H2' H 4.919 . . 3 1 1 G H8 H 8.09213 . . 4 2 2 G H1' H 5.88136 . . 5 2 2 G H2' H 4.919 . . 6 2 2 G H8 H 7.55561 . . 7 3 3 A H1' H 5.9754 . . 8 3 3 A H2 H 7.74017 . . 9 3 3 A H2' H 4.51522 . . 10 3 3 A H8 H 7.77078 . . 11 4 4 U H1' H 5.43075 . . 12 4 4 U H2' H 4.31484 . . 13 4 4 U H6 H 7.50582 . . 14 5 5 C H1' H 5.52064 . . 15 5 5 C H2' H 4.23477 . . 16 5 5 C H6 H 7.69185 . . 17 6 6 A H1' H 5.75639 . . 18 6 6 A H2 H 6.8515 . . 19 6 6 A H2' H 4.51888 . . 20 6 6 A H8 H 7.82715 . . 21 7 7 A H1' H 5.50281 . . 22 7 7 A H2 H 7.66695 . . 23 7 7 A H2' H 4.10821 . . 24 7 7 A H8 H 7.45978 . . 25 8 8 U H1' H 5.29963 . . 26 8 8 U H2' H 3.86435 . . 27 8 8 U H6 H 7.1967 . . 28 9 9 A H1' H 5.767 . . 29 9 9 A H2 H 7.92427 . . 30 9 9 A H2' H 4.55827 . . 31 9 9 A H8 H 8.05734 . . 32 10 10 G H1' H 5.32209 . . 33 10 10 G H2' H 4.47648 . . 34 10 10 G H8 H 7.63266 . . 35 11 11 C H1' H 5.7907 . . 36 11 11 C H2' H 4.35509 . . 37 11 11 C H6 H 7.59696 . . 38 12 12 A H1' H 5.8355 . . 39 12 12 A H2 H 7.57688 . . 40 12 12 A H8 H 8.25735 . . 41 13 13 G H1' H 5.67281 . . 42 13 13 G H2' H 4.58281 . . 43 13 13 G H8 H 7.27458 . . 44 14 14 G H1' H 5.7554 . . 45 14 14 G H2' H 4.59636 . . 46 14 14 G H8 H 7.15691 . . 47 15 15 U H1' H 5.61253 . . 48 15 15 U H2' H 4.6435 . . 49 15 15 U H6 H 7.62161 . . 50 16 16 G H1' H 5.7513 . . 51 16 16 G H2' H 4.6435 . . 52 16 16 G H8 H 7.67886 . . 53 17 17 U H1' H 5.40345 . . 54 17 17 U H2' H 4.46077 . . 55 17 17 U H6 H 7.60096 . . 56 18 18 G H1' H 5.76148 . . 57 18 18 G H2' H 4.48853 . . 58 18 18 G H8 H 7.67132 . . 59 19 19 G H1' H 5.68788 . . 60 19 19 G H2' H 4.56021 . . 61 19 19 G H8 H 7.18069 . . 62 20 20 C H1' H 5.40429 . . 63 20 20 C H2' H 4.53438 . . 64 20 20 C H6 H 7.37837 . . 65 21 21 A H1' H 5.86121 . . 66 21 21 A H2 H 8.14709 . . 67 21 21 A H2' H 4.45496 . . 68 21 21 A H8 H 7.95172 . . 69 22 22 C H1' H 5.35427 . . 70 22 22 C H2' H 3.94098 . . 71 22 22 C H6 H 7.38486 . . 72 23 23 A H1' H 5.88167 . . 73 23 23 A H2 H 7.99548 . . 74 23 23 A H8 H 8.25515 . . 75 24 24 C H1' H 5.35629 . . 76 24 24 C H2' H 4.29913 . . 77 24 24 C H6 H 7.42087 . . 78 25 25 C H1' H 5.57484 . . 79 25 25 C H2' H 4.31742 . . 80 25 25 C H6 H 7.67467 . . 81 26 26 A H1' H 5.95365 . . 82 26 26 A H2 H 7.46592 . . 83 26 26 A H2' H 4.30688 . . 84 26 26 A H8 H 8.22428 . . 85 27 27 G H1' H 5.43404 . . 86 27 27 G H2' H 4.34907 . . 87 27 27 G H8 H 7.59259 . . 88 28 28 U H1' H 5.51591 . . 89 28 28 U H2' H 4.14115 . . 90 28 28 U H6 H 7.72058 . . 91 29 29 C H1' H 5.60929 . . 92 29 29 C H2' H 4.60411 . . 93 29 29 C H6 H 7.88994 . . 94 30 30 A H1' H 5.77398 . . 95 30 30 A H2 H 7.29292 . . 96 30 30 A H2' H 4.63231 . . 97 30 30 A H8 H 7.90334 . . 98 31 31 U H1' H 5.23347 . . 99 31 31 U H2' H 4.10628 . . 100 31 31 U H6 H 7.53647 . . 101 32 32 A H1' H 5.89403 . . 102 32 32 A H2 H 7.37798 . . 103 32 32 A H2' H 4.58496 . . 104 32 32 A H8 H 8.33568 . . 105 33 33 C H1' H 5.3655 . . 106 33 33 C H2' H 4.23972 . . 107 33 33 C H6 H 7.47595 . . 108 34 34 C H1' H 5.4975 . . 109 34 34 C H2' H 4.51371 . . 110 34 34 C H6 H 7.73703 . . 111 35 35 U H1' H 5.89948 . . 112 35 35 U H2' H 4.35337 . . 113 35 35 U H6 H 7.75732 . . 114 36 36 U H1' H 5.7697 . . 115 36 36 U H6 H 7.88743 . . 116 37 37 G H1' H 5.76755 . . 117 37 37 G H2' H 4.42913 . . 118 37 37 G H8 H 7.85644 . . 119 38 38 A H1' H 5.91719 . . 120 38 38 A H2 H 7.65919 . . 121 38 38 A H2' H 4.47045 . . 122 38 38 A H8 H 7.81204 . . 123 39 39 U H1' H 5.43579 . . 124 39 39 U H2' H 4.3426 . . 125 39 39 U H6 H 7.56913 . . 126 40 40 C H1' H 5.54069 . . 127 40 40 C H2' H 4.19861 . . 128 40 40 C H6 H 7.78943 . . 129 41 41 C H1' H 5.70551 . . 130 41 41 C H2' H 3.95712 . . 131 41 41 C H6 H 7.61437 . . stop_ save_