data_4551 ####################### # Entry information # ####################### save_entry_information _Saveframe_category entry_information _Entry_title ; SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF RIBOSOMAL PROTEIN L9 ; _BMRB_accession_number 4551 _BMRB_flat_file_name bmr4551.str _Entry_type original _Submission_date 1999-08-20 _Accession_date 1999-12-06 _Entry_origination author _NMR_STAR_version 2.1.1 _Experimental_method NMR _Details . loop_ _Author_ordinal _Author_family_name _Author_given_name _Author_middle_initials _Author_family_title 1 Hua Y. . . 2 Kuhlman B. . . 3 Hoffman D. . . 4 Raleigh D. P. . stop_ loop_ _Saveframe_category_type _Saveframe_category_type_count coupling_constants 1 stop_ loop_ _Data_type _Data_type_count "coupling constants" 49 stop_ loop_ _Revision_date _Revision_keyword _Revision_author _Revision_detail 2003-01-06 original author . stop_ _Original_release_date 2003-01-06 save_ ############################# # Citation for this entry # ############################# save_entry_citation _Saveframe_category entry_citation _Citation_full . _Citation_title ; Structure and stability of the N-terminal domain of the ribosomal protein L9: evidence for rapid two-state folding. ; _Citation_status published _Citation_type journal _CAS_abstract_code . _MEDLINE_UI_code . _PubMed_ID 9454593 loop_ _Author_ordinal _Author_family_name _Author_given_name _Author_middle_initials _Author_family_title 1 Kuhlman B. . . 2 Boice J. A. . 3 Fairman R. . . 4 Raleigh D. P. . stop_ _Journal_abbreviation Biochemistry _Journal_name_full Biochemistry _Journal_volume 37 _Journal_issue 4 _Journal_CSD . _Book_chapter_title . _Book_volume . _Book_series . _Book_ISBN . _Conference_state_province . _Conference_abstract_number . _Page_first 1025 _Page_last 1032 _Year 1998 _Details . loop_ _Keyword 'PROTEIN L9' NMR stop_ save_ ################################## # Molecular system description # ################################## save_system_L9 _Saveframe_category molecular_system _Mol_system_name '50S RIBOSOMAL PROTEIN L9' _Abbreviation_common L9 _Enzyme_commission_number . loop_ _Mol_system_component_name _Mol_label '50S RIBOSOMAL PROTEIN L9' $L9 stop_ _System_molecular_weight . _System_physical_state native _System_oligomer_state monomer _System_paramagnetic no _System_thiol_state 'not present' _Database_query_date . _Details . save_ ######################## # Monomeric polymers # ######################## save_L9 _Saveframe_category monomeric_polymer _Mol_type polymer _Mol_polymer_class protein _Name_common '50S RIBOSOMAL PROTEIN L9' _Abbreviation_common L9 _Molecular_mass . _Mol_thiol_state 'not present' _Details . ############################## # Polymer residue sequence # ############################## _Residue_count 56 _Mol_residue_sequence ; MKVIFLKDVKGKGKKGEIKN VADGYANNFLFKQGLAIEAT PANLKALEAQKQKEQR ; loop_ _Residue_seq_code _Residue_label 1 MET 2 LYS 3 VAL 4 ILE 5 PHE 6 LEU 7 LYS 8 ASP 9 VAL 10 LYS 11 GLY 12 LYS 13 GLY 14 LYS 15 LYS 16 GLY 17 GLU 18 ILE 19 LYS 20 ASN 21 VAL 22 ALA 23 ASP 24 GLY 25 TYR 26 ALA 27 ASN 28 ASN 29 PHE 30 LEU 31 PHE 32 LYS 33 GLN 34 GLY 35 LEU 36 ALA 37 ILE 38 GLU 39 ALA 40 THR 41 PRO 42 ALA 43 ASN 44 LEU 45 LYS 46 ALA 47 LEU 48 GLU 49 ALA 50 GLN 51 LYS 52 GLN 53 LYS 54 GLU 55 GLN 56 ARG stop_ _Sequence_homology_query_date . _Sequence_homology_query_revised_last_date 2015-10-06 loop_ _Database_name _Database_accession_code _Database_entry_mol_name _Sequence_query_to_submitted_percentage _Sequence_subject_length _Sequence_identity _Sequence_positive _Sequence_homology_expectation_value BMRB 17460 L9 100.00 149 100.00 100.00 2.54e-29 BMRB 17506 NTL9 100.00 56 100.00 100.00 1.91e-29 BMRB 17761 "N-terminal Domain of the Ribosomal Protein L9" 100.00 56 100.00 100.00 1.91e-29 PDB 1CQU "Solution Structure Of The N-Terminal Domain Of Ribosomal Protein L9" 100.00 56 100.00 100.00 1.91e-29 PDB 1DIV "Ribosomal Protein L9" 100.00 149 100.00 100.00 2.54e-29 PDB 1GIY "Crystal Structure Of The Ribosome At 5.5 A Resolution. This File, 1giy, Contains The 50s Ribosome Subunit. The 30s Ribosome Sub" 100.00 149 100.00 100.00 2.54e-29 PDB 1YL3 "Crystal Structure Of 70s Ribosome With Thrs Operator And Trnas. Large Subunit. The Coordinates For The Small Subunit Are In The" 100.00 149 100.00 100.00 2.54e-29 PDB 2B66 "50s Ribosomal Subunit From A Crystal Structure Of Release Factor Rf1, Trnas And Mrna Bound To The Ribosome. This File Contains " 100.00 149 100.00 100.00 2.54e-29 PDB 2B9N "50s Ribosomal Subunit From A Crystal Structure Of Release Factor Rf2, Trnas And Mrna Bound To The Ribosome. This File Contains " 100.00 149 100.00 100.00 2.54e-29 PDB 2B9P "50s Ribosomal Subunit From A Crystal Structure Of The Ribosome In Complex With Trnas And Mrna With A Stop Codon In The A-Site. " 100.00 149 100.00 100.00 2.54e-29 PDB 2HBA "Crystal Structure Of N-terminal Domain Of Ribosomal Protein L9 (ntl9) K12m" 92.86 52 98.08 98.08 1.04e-25 PDB 2HBB "Crystal Structure Of The N-terminal Domain Of Ribosomal Protein L9 (ntl9)" 91.07 51 100.00 100.00 1.24e-25 PDB 2HVF "Crystal Structure Of N-terminal Domain Of Ribosomal Protein L9 (ntl9), G34da" 92.86 52 98.08 98.08 2.13e-25 PDB 487D "Seven Ribosomal Proteins Fitted To A Cryo-Electron Microscopic Map Of The Large 50s Subunit At 7.5 Angstroms Resolution" 100.00 149 100.00 100.00 2.54e-29 EMBL CAA43972 "ribosomal protein L9 [Geobacillus stearothermophilus]" 100.00 148 100.00 100.00 2.58e-29 GB AAA22701 "ribosomal protein L9 [Geobacillus stearothermophilus]" 100.00 149 98.21 98.21 2.21e-28 GB ABO68755 "Ribosomal protein L9 [Geobacillus thermodenitrificans NG80-2]" 100.00 149 100.00 100.00 3.02e-29 GB AGT33858 "50S ribosomal protein L9 [Geobacillus sp. JF8]" 100.00 149 100.00 100.00 3.15e-29 GB AKM20686 "50S ribosomal protein L9 [Geobacillus sp. 12AMOR1]" 100.00 149 100.00 100.00 2.54e-29 GB AKU26730 "50S ribosomal protein L9 [Geobacillus sp. LC300]" 100.00 149 98.21 98.21 9.04e-29 PRF 0701226A "ribosomal protein L17" 100.00 147 98.21 98.21 1.23e-26 PRF 1714237A "ribosomal protein L9" 100.00 148 100.00 100.00 2.58e-29 REF WP_008880809 "MULTISPECIES: 50S ribosomal protein L9 [Geobacillus]" 100.00 149 100.00 100.00 2.51e-29 REF WP_011888453 "50S ribosomal protein L9 [Geobacillus thermodenitrificans]" 100.00 149 100.00 100.00 3.02e-29 REF WP_020961638 "50S ribosomal protein L9 [Geobacillus sp. JF8]" 100.00 149 100.00 100.00 3.15e-29 REF WP_033008865 "MULTISPECIES: 50S ribosomal protein L9 [Bacillaceae]" 100.00 149 100.00 100.00 2.54e-29 REF WP_050368025 "50S ribosomal protein L9 [Geobacillus sp. LC300]" 100.00 149 98.21 98.21 9.04e-29 SP A4ITV1 "RecName: Full=50S ribosomal protein L9" 100.00 149 100.00 100.00 3.02e-29 SP P02417 "RecName: Full=50S ribosomal protein L9; AltName: Full=BL17" 100.00 149 100.00 100.00 2.54e-29 stop_ save_ #################### # Natural source # #################### save_natural_source _Saveframe_category natural_source loop_ _Mol_label _Organism_name_common _NCBI_taxonomy_ID _Superkingdom _Kingdom _Genus _Species $L9 'Bacillus stearothermophilus' 1422 Bacteria . Bacillus stearothermophilus stop_ save_ ######################### # Experimental source # ######################### save_experimental_source _Saveframe_category experimental_source loop_ _Mol_label _Production_method _Host_organism_name_common _Genus _Species _Strain _Vector_name $L9 . . . . . . stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_1 _Saveframe_category sample _Sample_type solution _Details . loop_ _Mol_label _Concentration_value _Concentration_value_units _Isotopic_labeling $L9 . mM . stop_ save_ ############################ # Computer software used # ############################ save_X-PLOR _Saveframe_category software _Name X-PLOR _Version 3.81 loop_ _Task 'STRUCTURE CALCULATION' stop_ _Details . save_ ######################### # Experimental detail # ######################### ################################## # NMR Spectrometer definitions # ################################## save_NMR_spectrometer _Saveframe_category NMR_spectrometer _Manufacturer Varian _Model Inova _Field_strength 600 _Details . save_ ############################# # NMR applied experiments # ############################# save__1 _Saveframe_category NMR_applied_experiment _Sample_label $sample_1 save_ save_NMR_applied_experiment _Saveframe_category NMR_applied_experiment _Experiment_name . _BMRB_pulse_sequence_accession_number . _Details '2D NOESY' save_ ####################### # Sample conditions # ####################### save_sample_cond_1 _Saveframe_category sample_conditions _Details . loop_ _Variable_type _Variable_value _Variable_value_error _Variable_value_units pH 5.0 . n/a temperature 298 . K pressure 1 . atm stop_ save_ ######################## # Coupling constants # ######################## save_HNHA_and_HNHB _Saveframe_category coupling_constants _Details . loop_ _Sample_label $sample_1 stop_ _Sample_conditions_label $sample_cond_1 _Spectrometer_frequency_1H 600 _Mol_system_component_name '50S RIBOSOMAL PROTEIN L9' _Text_data_format . _Text_data . loop_ _Coupling_constant_ID _Coupling_constant_code _Atom_one_residue_seq_code _Atom_one_residue_label _Atom_one_name _Atom_two_residue_seq_code _Atom_two_residue_label _Atom_two_name _Coupling_constant_value _Coupling_constant_min_value _Coupling_constant_max_value _Coupling_constant_value_error 1 3JHNHA 2 LYS H 2 LYS HA 7.9 . . . 2 3JHNHA 3 VAL H 3 VAL HA 10.6 . . . 3 3JHNHA 4 ILE H 4 ILE HA 10.45 . . . 4 3JHNHA 5 PHE H 5 PHE HA 7.3 . . . 5 3JHNHA 6 LEU H 6 LEU HA 9.05 . . . 6 3JHNHA 7 LYS H 7 LYS HA 8.65 . . . 7 3JHNHA 8 ASP H 8 ASP HA 5.2 . . . 8 3JHNHA 9 VAL H 9 VAL HA 9.9 . . . 9 3JHNHA 10 LYS H 10 LYS HA 4.25 . . . 10 3JHNHA 12 LYS H 12 LYS HA 10.5 . . . 11 3JHNHA 14 LYS H 14 LYS HA 9.7 . . . 12 3JHNHA 15 LYS H 15 LYS HA 2.35 . . . 13 3JHNHA 17 GLU H 17 GLU HA 6.95 . . . 14 3JHNHA 18 ILE H 18 ILE HA 9.85 . . . 15 3JHNHA 19 LYS H 19 LYS HA 7.9 . . . 16 3JHNHA 20 ASN H 20 ASN HA 11.2 . . . 17 3JHNHA 21 VAL H 21 VAL HA 9.4 . . . 18 3JHNHA 22 ALA H 22 ALA HA 3.45 . . . 19 3JHNHA 23 ASP H 23 ASP HA 3 . . . 20 3JHNHA 25 TYR H 25 TYR HA 5.15 . . . 21 3JHNHA 26 ALA H 26 ALA HA 3.7 . . . 22 3JHNHA 27 ASN H 27 ASN HA 4.2 . . . 23 3JHNHA 28 ASN H 28 ASN HA 8.9 . . . 24 3JHNHA 29 PHE H 29 PHE HA 9.0 . . . 25 3JHNHA 30 LEU H 30 LEU HA 3.9 . . . 26 3JHNHA 31 PHE H 31 PHE HA 5.9 . . . 27 3JHNHA 32 LYS H 32 LYS HA 5.95 . . . 28 3JHNHA 33 GLN H 33 GLN HA 8.15 . . . 29 3JHNHA 35 LEU H 35 LEU HA 8.3 . . . 30 3JHNHA 36 ALA H 36 ALA HA 6.8 . . . 31 3JHNHA 37 ILE H 37 ILE HA 8.3 . . . 32 3JHNHA 38 GLU H 38 GLU HA 3.25 . . . 33 3JHNHA 39 ALA H 39 ALA HA 7.4 . . . 34 3JHNHA 40 THR H 40 THR HA 7.6 . . . 35 3JHNHA 42 ALA H 42 ALA HA 3.55 . . . 36 3JHNHA 43 ASN H 43 ASN HA 6.1 . . . 37 3JHNHA 44 LEU H 44 LEU HA 5.0 . . . 38 3JHNHA 45 LYS H 45 LYS HA 4.3 . . . 39 3JHNHA 46 ALA H 46 ALA HA 4.8 . . . 40 3JHNHA 47 LEU H 47 LEU HA 5.1 . . . 41 3JHNHA 48 GLU H 48 GLU HA 4.4 . . . 42 3JHNHA 49 ALA H 49 ALA HA 4.4 . . . 43 3JHNHA 50 GLN H 50 GLN HA 5.5 . . . 44 3JHNHA 51 LYS H 51 LYS HA 5.6 . . . 45 3JHNHA 52 GLN H 52 GLN HA 5.3 . . . 46 3JHNHA 53 LYS H 53 LYS HA 5.7 . . . 47 3JHNHA 54 GLU H 54 GLU HA 5.9 . . . 48 3JHNHA 55 GLN H 55 GLN HA 6.4 . . . 49 3JHNHA 56 ARG H 56 ARG HA 6.8 . . . stop_ save_