data_6654 ####################### # Entry information # ####################### save_entry_information _Saveframe_category entry_information _Entry_title ; Solution structure of Jingzhaotoxin-VII ; _BMRB_accession_number 6654 _BMRB_flat_file_name bmr6654.str _Entry_type original _Submission_date 2005-06-03 _Accession_date 2005-06-03 _Entry_origination author _NMR_STAR_version 2.1.1 _Experimental_method NMR _Details . loop_ _Author_ordinal _Author_family_name _Author_given_name _Author_middle_initials _Author_family_title 1 Liao Z. . . stop_ loop_ _Saveframe_category_type _Saveframe_category_type_count assigned_chemical_shifts 1 stop_ loop_ _Data_type _Data_type_count "1H chemical shifts" 181 stop_ loop_ _Revision_date _Revision_keyword _Revision_author _Revision_detail 2006-02-23 original BMRB . stop_ _Original_release_date 2005-06-03 save_ ############################# # Citation for this entry # ############################# save_entry_citation _Saveframe_category entry_citation _Citation_full . _Citation_title ; Solution structure of Jingzhaotoxin-VII ; _Citation_status published _Citation_type 'BMRB only' _CAS_abstract_code . _MEDLINE_UI_code . _PubMed_ID ? loop_ _Author_ordinal _Author_family_name _Author_given_name _Author_middle_initials _Author_family_title 1 Liao Z. . . stop_ _Journal_abbreviation . _Journal_volume . _Journal_issue . _Journal_CSD . _Book_chapter_title . _Book_volume . _Book_series . _Book_ISBN . _Conference_state_province . _Conference_abstract_number . _Page_first . _Page_last . _Year . _Details . loop_ _Keyword Inhibitor cystine knot motif stop_ save_ ################################## # Molecular system description # ################################## save_system_JZTX-VII _Saveframe_category molecular_system _Mol_system_name Jingzhaotoxin-VII _Abbreviation_common JZTX-VII _Enzyme_commission_number . loop_ _Mol_system_component_name _Mol_label Jingzhaotoxin-VII $JZTX-VII stop_ _System_molecular_weight . _System_physical_state native _System_oligomer_state monomer _System_paramagnetic no _System_thiol_state 'all disulfide bound' _Database_query_date . _Details . save_ ######################## # Monomeric polymers # ######################## save_JZTX-VII _Saveframe_category monomeric_polymer _Mol_type polymer _Mol_polymer_class protein _Name_common Jingzhaotoxin-VII _Abbreviation_common JZTX-VII _Molecular_mass 3602 _Mol_thiol_state 'all disulfide bound' _Details . ############################## # Polymer residue sequence # ############################## _Residue_count 34 _Mol_residue_sequence ; GCGGLMAGCDGKSTFCCSGY NCSPTWKWCVYARP ; loop_ _Residue_seq_code _Residue_label 1 GLY 2 CYS 3 GLY 4 GLY 5 LEU 6 MET 7 ALA 8 GLY 9 CYS 10 ASP 11 GLY 12 LYS 13 SER 14 THR 15 PHE 16 CYS 17 CYS 18 SER 19 GLY 20 TYR 21 ASN 22 CYS 23 SER 24 PRO 25 THR 26 TRP 27 LYS 28 TRP 29 CYS 30 VAL 31 TYR 32 ALA 33 ARG 34 PRO stop_ _Sequence_homology_query_date 2008-08-19 _Sequence_homology_query_revised_last_date 2008-08-19 loop_ _Database_name _Database_accession_code _Database_entry_mol_name _Sequence_query_to_submitted_percentage _Sequence_subject_length _Sequence_identity _Sequence_positive _Sequence_homology_expectation_value PDB 1ZJQ 'Solution Structure Of Jingzhaotoxin-Vii' 100.00 34 100.00 100.00 2.87e-11 PDB 2AAP 'Solution Structure Of Jingzhaotoxin-Vii' 100.00 34 100.00 100.00 2.87e-11 GenBank ABY71653 'cystine knot toxin [Chilobrachys jingzhao]' 100.00 66 100.00 100.00 4.62e-12 GenBank ABY71654 'cystine knot toxin [Chilobrachys jingzhao]' 100.00 66 100.00 100.00 4.32e-12 SWISS-PROT P0C2X7 'Jingzhaotoxin-7 (Jingzhaotoxin-VII) (JzTx-VII)' 100.00 34 100.00 100.00 2.87e-11 stop_ save_ #################### # Natural source # #################### save_natural_source _Saveframe_category natural_source loop_ _Mol_label _Organism_name_common _NCBI_taxonomy_ID _Superkingdom _Kingdom _Genus _Species $JZTX-VII 'Chinese bird spider' 29017 Eukaryota Metazoa Ornithoctonus huwena stop_ save_ ######################### # Experimental source # ######################### save_experimental_source _Saveframe_category experimental_source loop_ _Mol_label _Production_method _Host_organism_name_common _Genus _Species _Strain _Vector_name $JZTX-VII 'purified from the natural source' . . . . . stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_1 _Saveframe_category sample _Sample_type solution _Details . loop_ _Mol_label _Concentration_value _Concentration_value_units _Isotopic_labeling $JZTX-VII 6 mM . 'phosphate buffer' 20 mM . H2O 90 % . D2O 10 % . stop_ save_ ############################ # Computer software used # ############################ save_FELIX _Saveframe_category software _Name FELIX _Version 98.0 loop_ _Task processing stop_ _Details . save_ save_X-PLOR _Saveframe_category software _Name X-PLOR _Version NIH2.9.6 loop_ _Task refinement stop_ _Details Brunger save_ ######################### # Experimental detail # ######################### ################################## # NMR Spectrometer definitions # ################################## save_NMR_spectrometer _Saveframe_category NMR_spectrometer _Manufacturer Bruker _Model DRX _Field_strength 500 _Details . save_ ############################# # NMR applied experiments # ############################# save_2D_NOESY_1 _Saveframe_category NMR_applied_experiment _Experiment_name '2D NOESY' _Sample_label . save_ save_2D_TOCSY_2 _Saveframe_category NMR_applied_experiment _Experiment_name '2D TOCSY' _Sample_label . save_ save_DQF-COSY_3 _Saveframe_category NMR_applied_experiment _Experiment_name DQF-COSY _Sample_label . save_ ####################### # Sample conditions # ####################### save_sample_cond_1 _Saveframe_category sample_conditions _Details . loop_ _Variable_type _Variable_value _Variable_value_error _Variable_value_units 'ionic strength' 20 . mM pH 4.0 0.5 pH pressure 1 . atm temperature 298 1 K stop_ save_ #################### # NMR parameters # #################### ############################## # Assigned chemical shifts # ############################## ################################ # Chemical shift referencing # ################################ save_chemical_shift_reference _Saveframe_category chemical_shift_reference _Details . loop_ _Mol_common_name _Atom_type _Atom_isotope_number _Atom_group _Chem_shift_units _Chem_shift_value _Reference_method _Reference_type _External_reference_sample_geometry _External_reference_location _External_reference_axis _Indirect_shift_ratio TSP H 1 methyl ppm 0.00 internal direct spherical internal parallel 13.46382 stop_ save_ ################################### # Assigned chemical shift lists # ################################### ################################################################### # Chemical Shift Ambiguity Index Value Definitions # # # # The values other than 1 are used for those atoms with different # # chemical shifts that cannot be assigned to stereospecific atoms # # or to specific residues or chains. # # # # Index Value Definition # # # # 1 Unique (including isolated methyl protons, # # geminal atoms, and geminal methyl # # groups with identical chemical shifts) # # (e.g. ILE HD11, HD12, HD13 protons) # # 2 Ambiguity of geminal atoms or geminal methyl # # proton groups (e.g. ASP HB2 and HB3 # # protons, LEU CD1 and CD2 carbons, or # # LEU HD11, HD12, HD13 and HD21, HD22, # # HD23 methyl protons) # # 3 Aromatic atoms on opposite sides of # # symmetrical rings (e.g. TYR HE1 and HE2 # # protons) # # 4 Intraresidue ambiguities (e.g. LYS HG and # # HD protons or TRP HZ2 and HZ3 protons) # # 5 Interresidue ambiguities (LYS 12 vs. LYS 27) # # 6 Intermolecular ambiguities (e.g. ASP 31 CA # # in monomer 1 and ASP 31 CA in monomer 2 # # of an asymmetrical homodimer, duplex # # DNA assignments, or other assignments # # that may apply to atoms in one or more # # molecule in the molecular assembly) # # 9 Ambiguous, specific ambiguity not defined # # # ################################################################### save_chemical_shift_set_1 _Saveframe_category assigned_chemical_shifts _Details . loop_ _Experiment_label '2D NOESY' '2D TOCSY' DQF-COSY stop_ loop_ _Sample_label $sample_1 stop_ _Sample_conditions_label $sample_cond_1 _Chem_shift_reference_set_label $chemical_shift_reference _Mol_system_component_name Jingzhaotoxin-VII _Text_data_format . _Text_data . loop_ _Atom_shift_assign_ID _Residue_author_seq_code _Residue_seq_code _Residue_label _Atom_name _Atom_type _Chem_shift_value _Chem_shift_value_error _Chem_shift_ambiguity_code 1 . 1 GLY HA2 H 3.94 0.01 1 2 . 1 GLY HA3 H 3.94 0.01 1 3 . 2 CYS H H 8.68 0.01 1 4 . 2 CYS HA H 4.80 0.01 1 5 . 2 CYS HB2 H 3.11 0.01 2 6 . 2 CYS HB3 H 2.99 0.01 2 7 . 3 GLY H H 8.99 0.01 1 8 . 3 GLY HA2 H 4.10 0.01 2 9 . 3 GLY HA3 H 3.69 0.01 2 10 . 4 GLY H H 7.98 0.01 1 11 . 4 GLY HA2 H 3.46 0.01 2 12 . 4 GLY HA3 H 3.15 0.01 2 13 . 5 LEU H H 7.46 0.01 1 14 . 5 LEU HA H 3.31 0.01 1 15 . 5 LEU HB2 H 1.54 0.01 2 16 . 5 LEU HB3 H 1.28 0.01 2 17 . 5 LEU HG H 1.28 0.01 1 18 . 5 LEU HD1 H 0.83 0.01 1 19 . 5 LEU HD2 H 0.83 0.01 1 20 . 6 MET H H 9.24 0.01 1 21 . 6 MET HA H 3.30 0.01 1 22 . 6 MET HB2 H 1.90 0.01 2 23 . 6 MET HB3 H 1.65 0.01 2 24 . 6 MET HG2 H 1.28 0.01 1 25 . 6 MET HG3 H 1.28 0.01 1 26 . 7 ALA H H 8.15 0.01 1 27 . 7 ALA HA H 4.28 0.01 1 28 . 7 ALA HB H 1.34 0.01 1 29 . 8 GLY H H 8.58 0.01 1 30 . 8 GLY HA2 H 4.44 0.01 2 31 . 8 GLY HA3 H 3.80 0.01 2 32 . 9 CYS H H 8.09 0.01 1 33 . 9 CYS HA H 4.94 0.01 1 34 . 9 CYS HB2 H 3.03 0.01 2 35 . 9 CYS HB3 H 2.94 0.01 2 36 . 10 ASP H H 8.39 0.01 1 37 . 10 ASP HA H 4.65 0.01 1 38 . 10 ASP HB2 H 2.98 0.01 2 39 . 10 ASP HB3 H 2.59 0.01 2 40 . 11 GLY H H 8.29 0.01 1 41 . 11 GLY HA2 H 4.06 0.01 2 42 . 11 GLY HA3 H 3.66 0.01 2 43 . 12 LYS H H 8.40 0.01 1 44 . 12 LYS HA H 4.53 0.01 1 45 . 12 LYS HB2 H 1.78 0.01 2 46 . 12 LYS HB3 H 1.62 0.01 2 47 . 12 LYS HG2 H 1.38 0.01 2 48 . 12 LYS HG3 H 1.32 0.01 2 49 . 12 LYS HZ H 7.14 0.01 1 50 . 13 SER H H 9.75 0.01 1 51 . 13 SER HA H 4.65 0.01 1 52 . 13 SER HB2 H 3.90 0.01 1 53 . 13 SER HB3 H 3.90 0.01 1 54 . 14 THR H H 8.09 0.01 1 55 . 14 THR HA H 4.56 0.01 1 56 . 14 THR HB H 4.16 0.01 1 57 . 14 THR HG2 H 1.12 0.01 1 58 . 15 PHE H H 8.67 0.01 1 59 . 15 PHE HA H 4.92 0.01 1 60 . 15 PHE HB2 H 3.28 0.01 2 61 . 15 PHE HB3 H 2.84 0.01 2 62 . 15 PHE HD1 H 7.12 0.01 1 63 . 15 PHE HD2 H 7.12 0.01 1 64 . 15 PHE HE1 H 7.23 0.01 1 65 . 15 PHE HE2 H 7.23 0.01 1 66 . 15 PHE HZ H 7.08 0.01 1 67 . 16 CYS H H 9.33 0.01 1 68 . 16 CYS HA H 5.15 0.01 1 69 . 16 CYS HB2 H 3.27 0.01 2 70 . 16 CYS HB3 H 2.67 0.01 2 71 . 17 CYS H H 9.97 0.01 1 72 . 17 CYS HA H 4.72 0.01 1 73 . 17 CYS HB2 H 3.55 0.01 2 74 . 17 CYS HB3 H 2.54 0.01 2 75 . 18 SER H H 8.62 0.01 1 76 . 18 SER HA H 4.37 0.01 1 77 . 18 SER HB2 H 3.92 0.01 2 78 . 18 SER HB3 H 3.90 0.01 2 79 . 19 GLY H H 8.89 0.01 1 80 . 19 GLY HA2 H 4.22 0.01 2 81 . 19 GLY HA3 H 3.53 0.01 2 82 . 20 TYR H H 8.31 0.01 1 83 . 20 TYR HA H 5.37 0.01 1 84 . 20 TYR HB2 H 3.23 0.01 2 85 . 20 TYR HB3 H 2.88 0.01 2 86 . 20 TYR HD1 H 6.66 0.01 1 87 . 20 TYR HD2 H 6.66 0.01 1 88 . 20 TYR HE1 H 6.59 0.01 1 89 . 20 TYR HE2 H 6.59 0.01 1 90 . 21 ASN H H 9.48 0.01 1 91 . 21 ASN HA H 5.13 0.01 1 92 . 21 ASN HB2 H 2.74 0.01 2 93 . 21 ASN HB3 H 2.58 0.01 2 94 . 21 ASN HD21 H 7.56 0.01 2 95 . 21 ASN HD22 H 7.05 0.01 2 96 . 22 CYS H H 9.22 0.01 1 97 . 22 CYS HA H 4.76 0.01 1 98 . 22 CYS HB2 H 3.05 0.01 2 99 . 22 CYS HB3 H 2.94 0.01 2 100 . 23 SER H H 8.55 0.01 1 101 . 23 SER HA H 4.78 0.01 1 102 . 23 SER HB2 H 4.44 0.01 2 103 . 23 SER HB3 H 4.02 0.01 2 104 . 24 PRO HA H 4.42 0.01 1 105 . 24 PRO HB2 H 2.35 0.01 2 106 . 24 PRO HB3 H 1.93 0.01 2 107 . 24 PRO HG2 H 2.07 0.01 1 108 . 24 PRO HG3 H 2.07 0.01 1 109 . 24 PRO HD2 H 4.19 0.01 2 110 . 24 PRO HD3 H 3.93 0.01 2 111 . 25 THR H H 7.22 0.01 1 112 . 25 THR HA H 3.79 0.01 1 113 . 25 THR HB H 3.07 0.01 1 114 . 25 THR HG2 H 0.26 0.01 1 115 . 26 TRP H H 7.06 0.01 1 116 . 26 TRP HA H 4.14 0.01 1 117 . 26 TRP HB2 H 1.43 0.01 2 118 . 26 TRP HB3 H 1.13 0.01 2 119 . 26 TRP HD1 H 6.92 0.01 4 120 . 26 TRP HE1 H 10.06 0.01 4 121 . 26 TRP HE3 H 7.19 0.01 4 122 . 26 TRP HZ2 H 7.47 0.01 4 123 . 26 TRP HZ3 H 6.62 0.01 4 124 . 26 TRP HH2 H 6.80 0.01 4 125 . 27 LYS H H 8.08 0.01 1 126 . 27 LYS HA H 3.91 0.01 1 127 . 27 LYS HB2 H 2.13 0.01 1 128 . 27 LYS HB3 H 2.13 0.01 1 129 . 27 LYS HG2 H 1.23 0.01 1 130 . 27 LYS HG3 H 1.23 0.01 1 131 . 27 LYS HD2 H 1.64 0.01 1 132 . 27 LYS HD3 H 1.64 0.01 1 133 . 27 LYS HE2 H 2.96 0.01 1 134 . 27 LYS HE3 H 2.96 0.01 1 135 . 27 LYS HZ H 7.48 0.01 1 136 . 28 TRP H H 7.11 0.01 1 137 . 28 TRP HA H 5.72 0.01 1 138 . 28 TRP HB2 H 3.23 0.01 2 139 . 28 TRP HB3 H 2.69 0.01 2 140 . 28 TRP HD1 H 6.96 0.01 4 141 . 28 TRP HE1 H 9.90 0.01 4 142 . 28 TRP HE3 H 7.54 0.01 4 143 . 29 CYS H H 9.09 0.01 1 144 . 29 CYS HA H 5.22 0.01 1 145 . 29 CYS HB2 H 3.46 0.01 2 146 . 29 CYS HB3 H 2.50 0.01 2 147 . 30 VAL H H 9.62 0.01 1 148 . 30 VAL HA H 4.95 0.01 1 149 . 30 VAL HB H 2.60 0.01 1 150 . 30 VAL HG1 H 1.387 0.01 2 151 . 30 VAL HG2 H 1.13 0.01 2 152 . 31 TYR H H 8.49 0.01 1 153 . 31 TYR HA H 4.28 0.01 1 154 . 31 TYR HB2 H 3.04 0.01 2 155 . 31 TYR HB3 H 2.84 0.01 2 156 . 31 TYR HD1 H 7.03 0.01 1 157 . 31 TYR HD2 H 7.03 0.01 1 158 . 31 TYR HE1 H 6.88 0.01 1 159 . 31 TYR HE2 H 6.88 0.01 1 160 . 32 ALA H H 8.24 0.01 1 161 . 32 ALA HA H 4.31 0.01 1 162 . 32 ALA HB H 1.13 0.01 1 163 . 33 ARG H H 8.05 0.01 1 164 . 33 ARG HA H 4.61 0.01 1 165 . 33 ARG HB2 H 1.85 0.01 2 166 . 33 ARG HB3 H 1.71 0.01 2 167 . 33 ARG HG2 H 1.66 0.01 1 168 . 33 ARG HG3 H 1.66 0.01 1 169 . 33 ARG HD2 H 3.22 0.01 1 170 . 33 ARG HD3 H 3.22 0.01 1 171 . 33 ARG HH11 H 7.21 0.01 1 172 . 33 ARG HH12 H 7.21 0.01 1 173 . 33 ARG HH21 H 7.21 0.01 1 174 . 33 ARG HH22 H 7.21 0.01 1 175 . 34 PRO HA H 4.37 0.01 1 176 . 34 PRO HB2 H 2.32 0.01 2 177 . 34 PRO HB3 H 1.96 0.01 2 178 . 34 PRO HG2 H 2.04 0.01 1 179 . 34 PRO HG3 H 2.04 0.01 1 180 . 34 PRO HD2 H 3.77 0.01 2 181 . 34 PRO HD3 H 3.63 0.01 2 stop_ save_