data_bmse000897 ####################### # Entry information # ####################### save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID bmse000897 _Entry.Title D_ornithine _Entry.Version_type update _Entry.Submission_date 2012-02-23 _Entry.Accession_date 2012-02-23 _Entry.Last_release_date 2012-10-17 _Entry.Original_release_date 2012-02-23 _Entry.Origination author _Entry.NMR_STAR_version 3.1.1.21 _Entry.Original_NMR_STAR_version 3.1.1.21 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.DOI 10.13018/BMSE000897 _Entry.BMRB_internal_directory_name D_ornithine loop_ _Entry_author.Ordinal _Entry_author.Given_name _Entry_author.Family_name _Entry_author.Middle_initials _Entry_author.Entry_ID 1 Francisca Jofre ? bmse000897 2 Mark Anderson E. bmse000897 3 John Markley L. bmse000897 stop_ loop_ _Entry_src.ID _Entry_src.Project_name _Entry_src.Organization_full_name _Entry_src.Organization_initials _Entry_src.Entry_ID 1 metabolomics 'National Magnetic Facility at Madison' NMRFAM bmse000897 2 metabolomics 'Biological Magnetic Resonance Bank' BMRB bmse000897 stop_ loop_ _Data_set.Type _Data_set.Count _Data_set.Entry_ID assigned_chemical_shifts 1 bmse000897 stop_ loop_ _Datum.Type _Datum.Count _Datum.Entry_ID '13C chemical shifts' 5 bmse000897 '1H chemical shifts' 7 bmse000897 stop_ loop_ _Release.Release_number _Release.Format_type _Release.Format_version _Release.Date _Release.Submission_date _Release.Type _Release.Author _Release.Detail _Release.Entry_ID 1 . . 2012-02-23 2012-02-23 original BMRB 'Original spectra from BMRB' bmse000897 2 . . 2012-03-09 2012-02-23 update BMRB 'fixed data paths for 1H_13C_HSQC_SW_small' bmse000897 3 . . 2012-09-13 2012-02-23 update BMRB 'Added PubChem SID 144080899 to database loop' bmse000897 4 . . 2012-10-12 2012-02-23 update BMRB 'Set assigned_chemical_shifts with data from bmse000019' bmse000897 5 . . 2012-10-17 2012-02-23 update BMRB 'Set all _Chem_comp_SMILES Types to lower case' bmse000897 6 . . 2017-10-12 2017-10-12 update BMRB 'Remediated Experiment_file loop if present and standardized mol and png file tags.' bmse000897 7 . . 2017-12-19 2017-10-12 update BMRB 'InChI numbering updated according to ALATIS' bmse000897 stop_ save_ ############### # Citations # ############### save_citation_1 _Citation.Sf_category citations _Citation.Sf_framecode citation_1 _Citation.Entry_ID bmse000897 _Citation.ID 1 _Citation.Class 'reference citation' _Citation.PubMed_ID 17170002 _Citation.Title 'Database resources of the National Center for Biotechnology Information.' _Citation.Status published _Citation.Type internet _Citation.WWW_URL http://pubchem.ncbi.nlm.nih.gov/ _Citation.Year 2006 loop_ _Citation_author.Ordinal _Citation_author.Given_name _Citation_author.Family_name _Citation_author.First_initial _Citation_author.Middle_initials _Citation_author.Entry_ID _Citation_author.Citation_ID 1 D. Wheeler D. L. bmse000897 1 2 T. Barrett T. ? bmse000897 1 3 D. Benson D. A. bmse000897 1 4 S. Bryant S. H. bmse000897 1 5 K. Canese K. ? bmse000897 1 6 V. Chetvenin V. ? bmse000897 1 7 D. Church D. M. bmse000897 1 8 M. DiCuccio M. ? bmse000897 1 9 R. Edgar R. ? bmse000897 1 10 S. Federhen S. ? bmse000897 1 11 L. Geer L. Y. bmse000897 1 12 W. Helmberg W. ? bmse000897 1 13 Y. Kapustin Y. ? bmse000897 1 14 D. Kenton D. L. bmse000897 1 15 O. Khovayko O. ? bmse000897 1 16 D. Lipman D. J. bmse000897 1 17 T. Madden T. L. bmse000897 1 18 D. Maglott D. R. bmse000897 1 19 J. Ostell J. ? bmse000897 1 20 K. Pruitt K. D. bmse000897 1 21 G. Schuler G. D. bmse000897 1 22 L. Schriml L. M. bmse000897 1 23 E. Sequeira E. ? bmse000897 1 24 S. Sherry S. T. bmse000897 1 25 K. Sirotkin K. ? bmse000897 1 26 A. Souvorov A. ? bmse000897 1 27 G. Starchenko G. ? bmse000897 1 28 T. Suzek T. O. bmse000897 1 29 R. Tatusov R. ? bmse000897 1 30 T. Tatusova T. A. bmse000897 1 31 L. Bagner L. ? bmse000897 1 32 E. Yaschenko E. ? bmse000897 1 stop_ save_ ############################################# # Molecular system (assembly) description # ############################################# save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID bmse000897 _Assembly.ID 1 _Assembly.Name D-Ornithine _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state 'not reported' loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 D_ornithine 1 $D_ornithine yes native no no bmse000897 1 stop_ save_ #################################### # Biological polymers and ligands # #################################### save_D_ornithine _Entity.Sf_category entity _Entity.Sf_framecode D_ornithine _Entity.Entry_ID bmse000897 _Entity.ID 1 _Entity.Name D-ornithine _Entity.Type non-polymer _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Paramagnetic no _Entity.Thiol_state 'not reported' loop_ _Entity_comp_index.ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 1 $chem_comp_1 bmse000897 1 stop_ save_ #################### # Natural source # #################### save_natural_source _Entity_natural_src_list.Sf_category natural_source _Entity_natural_src_list.Sf_framecode natural_source _Entity_natural_src_list.Entry_ID bmse000897 _Entity_natural_src_list.ID 1 loop_ _Entity_natural_src.ID _Entity_natural_src.Entity_ID _Entity_natural_src.Entity_label _Entity_natural_src.NCBI_taxonomy_ID _Entity_natural_src.Type _Entity_natural_src.Common _Entity_natural_src.Organism_name_scientific _Entity_natural_src.Organism_name_common _Entity_natural_src.Superkingdom _Entity_natural_src.Kingdom _Entity_natural_src.Genus _Entity_natural_src.Species _Entity_natural_src.Entry_ID _Entity_natural_src.Entity_natural_src_list_ID 1 1 $D_ornithine n/a 'multiple natural sources' yes 'not applicable' n/a n/a n/a n/a n/a bmse000897 1 stop_ save_ ######################### # Experimental source # ######################### save_experimental_source _Entity_experimental_src_list.Sf_category experimental_source _Entity_experimental_src_list.Sf_framecode experimental_source _Entity_experimental_src_list.Entry_ID bmse000897 _Entity_experimental_src_list.ID 1 loop_ _Entity_experimental_src.ID _Entity_experimental_src.Entity_ID _Entity_experimental_src.Entity_label _Entity_experimental_src.Production_method _Entity_experimental_src.Entry_ID _Entity_experimental_src.Entity_experimental_src_list_ID 1 1 $D_ornithine 'chemical synthesis' bmse000897 1 stop_ save_ ################################# # Polymer residues and ligands # ################################# save_chem_comp_1 _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_1 _Chem_comp.Entry_ID bmse000897 _Chem_comp.ID 1 _Chem_comp.Provenance PubChem _Chem_comp.Name D-Ornithine _Chem_comp.Type non-polymer _Chem_comp.InChI_code InChI=1S/C5H12N2O2/c6-3-1-2-4(7)5(8)9/h4H,1-3,6-7H2,(H,8,9)/t4-/m1/s1 _Chem_comp.Paramagnetic no _Chem_comp.Aromatic no _Chem_comp.Formula 'C5 H12 N2 O2' _Chem_comp.Formula_weight 132.1609800000 _Chem_comp.Formula_mono_iso_wt_nat 132.08987764 _Chem_comp.Formula_mono_iso_wt_13C 137.106651829 _Chem_comp.Formula_mono_iso_wt_15N 134.083947426 _Chem_comp.Formula_mono_iso_wt_13C_15N 139.1007216152 _Chem_comp.Image_file_name bmse000897.png _Chem_comp.Image_file_format png _Chem_comp.Struct_file_name bmse000897.mol _Chem_comp.Struct_file_format mol loop_ _Chem_comp_common_name.Name _Chem_comp_common_name.Type _Chem_comp_common_name.Entry_ID _Chem_comp_common_name.Comp_ID D-Ornithine synonym bmse000897 1 stop_ loop_ _Chem_comp_descriptor.Descriptor _Chem_comp_descriptor.Type _Chem_comp_descriptor.Program _Chem_comp_descriptor.Program_version _Chem_comp_descriptor.Entry_ID _Chem_comp_descriptor.Comp_ID InChI=1S/C5H12N2O2/c6-3-1-2-4(7)5(8)9/h4H,1-3,6-7H2,(H,8,9)/t4-/m1/s1 INCHI na na bmse000897 1 InChI=1S/C5H12N2O2/c6-3-1-2-4(7)5(8)9/h4H,1-3,6-7H2,(H,8,9)/t4-/m1/s1 INCHI ALATIS 3.003 bmse000897 1 stop_ loop_ _Chem_comp_systematic_name.Name _Chem_comp_systematic_name.Naming_system _Chem_comp_systematic_name.Entry_ID _Chem_comp_systematic_name.Comp_ID '(2R)-2,5-diaminopentanoic acid' IUPAC bmse000897 1 '(2R)-2,5-diaminopentanoic acid' IUPAC_TRADITIONAL bmse000897 1 '(2R)-2,5-diaminopentanoic acid' IUPAC_CAS bmse000897 1 '(2R)-2,5-diaminopentanoic acid' IUPAC_OPENEYE bmse000897 1 '(2R)-2,5-diaminopentanoic acid' IUPAC_SYSTEMATIC bmse000897 1 stop_ loop_ _Chem_comp_SMILES.Type _Chem_comp_SMILES.String _Chem_comp_SMILES.Entry_ID _Chem_comp_SMILES.Comp_ID isomeric C(C[C@H](C(=O)O)N)CN bmse000897 1 canonical C(CC(C(=O)O)N)CN bmse000897 1 stop_ loop_ _Chem_comp_atom.Atom_ID _Chem_comp_atom.Type_symbol _Chem_comp_atom.Drawing_2D_coord_x _Chem_comp_atom.Drawing_2D_coord_y _Chem_comp_atom.PDBX_ordinal _Chem_comp_atom.Entry_ID _Chem_comp_atom.Comp_ID C5 C 5.1350 1.5600 1 bmse000897 1 C4 C 4.2690 1.0600 2 bmse000897 1 C2 C 4.2690 0.0600 3 bmse000897 1 C1 C 3.4030 -0.4400 4 bmse000897 1 C3 C 3.4030 -1.4400 5 bmse000897 1 O8 O 5.1350 2.5600 6 bmse000897 1 O9 O 6.0010 1.0600 7 bmse000897 1 H21 H 6.5380 1.3700 8 bmse000897 1 N7 N 3.4030 1.5600 9 bmse000897 1 H19 H 2.8660 1.2500 10 bmse000897 1 H20 H 3.4030 2.1800 11 bmse000897 1 N6 N 2.5369 -1.9400 12 bmse000897 1 H17 H 2.5369 -2.5600 13 bmse000897 1 H18 H 2.0000 -1.6300 14 bmse000897 1 H16 H 4.2690 1.6800 15 bmse000897 1 H12 H 4.4810 -0.5226 16 bmse000897 1 H13 H 4.8796 0.1677 17 bmse000897 1 H10 H 3.1909 0.1426 18 bmse000897 1 H11 H 2.7924 -0.5477 19 bmse000897 1 H14 H 3.6150 -2.0226 20 bmse000897 1 H15 H 4.0135 -1.3323 21 bmse000897 1 stop_ loop_ _Atom_nomenclature.Atom_ID _Atom_nomenclature.Atom_name _Atom_nomenclature.Naming_system _Atom_nomenclature.Entry_ID _Atom_nomenclature.Comp_ID C5 C1 BMRB bmse000897 1 C4 C2 BMRB bmse000897 1 C2 C3 BMRB bmse000897 1 C1 C4 BMRB bmse000897 1 C3 C5 BMRB bmse000897 1 O8 O6 BMRB bmse000897 1 O9 O7 BMRB bmse000897 1 H21 H8 BMRB bmse000897 1 N7 N9 BMRB bmse000897 1 H19 H10 BMRB bmse000897 1 H20 H11 BMRB bmse000897 1 N6 N12 BMRB bmse000897 1 H17 H13 BMRB bmse000897 1 H18 H14 BMRB bmse000897 1 H16 H15 BMRB bmse000897 1 H12 H16 BMRB bmse000897 1 H13 H17 BMRB bmse000897 1 H10 H18 BMRB bmse000897 1 H11 H19 BMRB bmse000897 1 H14 H20 BMRB bmse000897 1 H15 H21 BMRB bmse000897 1 C5 C5 ALATIS bmse000897 1 C4 C4 ALATIS bmse000897 1 C2 C2 ALATIS bmse000897 1 C1 C1 ALATIS bmse000897 1 C3 C3 ALATIS bmse000897 1 O8 O8 ALATIS bmse000897 1 O9 O9 ALATIS bmse000897 1 H21 H21 ALATIS bmse000897 1 N7 N7 ALATIS bmse000897 1 H19 H19 ALATIS bmse000897 1 H20 H20 ALATIS bmse000897 1 N6 N6 ALATIS bmse000897 1 H17 H17 ALATIS bmse000897 1 H18 H18 ALATIS bmse000897 1 H16 H16 ALATIS bmse000897 1 H12 H12 ALATIS bmse000897 1 H13 H13 ALATIS bmse000897 1 H10 H10 ALATIS bmse000897 1 H11 H11 ALATIS bmse000897 1 H14 H14 ALATIS bmse000897 1 H15 H15 ALATIS bmse000897 1 stop_ loop_ _Chem_comp_bond.ID _Chem_comp_bond.Type _Chem_comp_bond.Value_order _Chem_comp_bond.Atom_ID_1 _Chem_comp_bond.Atom_ID_2 _Chem_comp_bond.Entry_ID _Chem_comp_bond.Comp_ID 1 covalent SING C5 C4 bmse000897 1 2 covalent DOUB C5 O8 bmse000897 1 3 covalent SING C5 O9 bmse000897 1 4 covalent SING C4 C2 bmse000897 1 5 covalent SING C4 N7 bmse000897 1 6 covalent SING C4 H16 bmse000897 1 7 covalent SING C2 C1 bmse000897 1 8 covalent SING C2 H12 bmse000897 1 9 covalent SING C2 H13 bmse000897 1 10 covalent SING C1 C3 bmse000897 1 11 covalent SING C1 H10 bmse000897 1 12 covalent SING C1 H11 bmse000897 1 13 covalent SING C3 N6 bmse000897 1 14 covalent SING C3 H14 bmse000897 1 15 covalent SING C3 H15 bmse000897 1 16 covalent SING O9 H21 bmse000897 1 17 covalent SING N7 H19 bmse000897 1 18 covalent SING N7 H20 bmse000897 1 19 covalent SING N6 H17 bmse000897 1 20 covalent SING N6 H18 bmse000897 1 stop_ loop_ _Chem_comp_db_link.Author_supplied _Chem_comp_db_link.Database_code _Chem_comp_db_link.Accession_code _Chem_comp_db_link.Accession_code_type _Chem_comp_db_link.Entry_mol_name _Chem_comp_db_link.Entry_relation_type _Chem_comp_db_link.Entry_ID _Chem_comp_db_link.Comp_ID no PubChem 144080899 sid D-Ornithine 'matching entry' bmse000897 1 no PubChem 213263 sid D-Ornithine 'matching entry' bmse000897 1 no PubChem 71082 cid D-Ornithine 'matching entry' bmse000897 1 no PubChem 3798 sid D-Ornithine 'matching entry' bmse000897 1 no KEGG C00515 'compound ID' D-Ornithine 'matching entry' bmse000897 1 no 'CAS Registry' 348-66-3 'registry number' D-Ornithine 'matching entry' bmse000897 1 no CHEBI 16176 ? D-Ornithine 'matching entry' bmse000897 1 no EINECS 206-482-0 ? D-Ornithine 'matching entry' bmse000897 1 no PDB ORD 'Chemical Component' D-Ornithine 'matching entry' bmse000897 1 stop_ loop_ _Chem_comp_citation.Citation_ID _Chem_comp_citation.Citation_label _Chem_comp_citation.Entry_ID _Chem_comp_citation.Comp_ID 1 $citation_1 bmse000897 1 stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_1 _Sample.Sf_category sample _Sample.Sf_framecode sample_1 _Sample.Entry_ID bmse000897 _Sample.ID 1 _Sample.Type solution loop_ _Sample_component.ID _Sample_component.Mol_common_name _Sample_component.Isotopic_labeling _Sample_component.Entity_ID _Sample_component.Entity_label _Sample_component.Type _Sample_component.Concentration_val _Sample_component.Concentration_val_units _Sample_component.Vendor _Sample_component.Vendor_product_name _Sample_component.Vendor_product_code _Sample_component.Entry_ID _Sample_component.Sample_ID 1 D-Ornithine 'natural abundance' 1 $D_ornithine Solute 100 mM Sigma 'D-Ornithine monohydrochloride' o5250 bmse000897 1 2 D2O ? 1 ? Solvent 100 % ? ? ? bmse000897 1 3 'sodium phosphate' ? 1 ? Buffer 50 mM ? ? ? bmse000897 1 4 'sodium azide' ? 1 ? Cytocide 500 uM ? ? ? bmse000897 1 5 DSS ? 1 ? Reference 500 uM ? ? ? bmse000897 1 stop_ save_ ####################### # Sample conditions # ####################### save_sample_conditions_1 _Sample_condition_list.Sf_category sample_conditions _Sample_condition_list.Sf_framecode sample_conditions_1 _Sample_condition_list.Entry_ID bmse000897 _Sample_condition_list.ID 1 loop_ _Sample_condition_variable.Type _Sample_condition_variable.Val _Sample_condition_variable.Val_units _Sample_condition_variable.Entry_ID _Sample_condition_variable.Sample_condition_list_ID pH 7.4 pH bmse000897 1 temperature 298 K bmse000897 1 stop_ save_ ############################ # Computer software used # ############################ save_software_1 _Software.Sf_category software _Software.Sf_framecode software_1 _Software.Entry_ID bmse000897 _Software.ID 1 _Software.Name TopSpin _Software.Version 2.1 loop_ _Vendor.Name _Vendor.Entry_ID _Vendor.Software_ID 'Bruker Biospin' bmse000897 1 stop_ loop_ _Task.Task _Task.Entry_ID _Task.Software_ID Collection bmse000897 1 Processing bmse000897 1 'Data analysis' bmse000897 1 'Peak picking' bmse000897 1 stop_ save_ ######################### # Experimental detail # ######################### ################################## # NMR Spectrometer definitions # ################################## save_Bruker_DMX_600 _NMR_spectrometer.Sf_category NMR_spectrometer _NMR_spectrometer.Sf_framecode Bruker_DMX_600 _NMR_spectrometer.Entry_ID bmse000897 _NMR_spectrometer.ID 1 _NMR_spectrometer.Manufacturer Bruker _NMR_spectrometer.Model DMX _NMR_spectrometer.Field_strength 600 save_ ############################# # NMR applied experiments # ############################# save_experiment_list _Experiment_list.Sf_category experiment_list _Experiment_list.Sf_framecode experiment_list _Experiment_list.Entry_ID bmse000897 _Experiment_list.ID 1 loop_ _Experiment.ID _Experiment.Name _Experiment.Raw_data_flag _Experiment.Sample_ID _Experiment.Sample_label _Experiment.Sample_state _Experiment.Sample_condition_list_ID _Experiment.Sample_condition_list_label _Experiment.NMR_spectrometer_ID _Experiment.NMR_spectrometer_label _Experiment.Entry_ID _Experiment.Experiment_list_ID 1 '1D 1H' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000897 1 2 '2D [1H,1H]-TOCSY' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000897 1 3 '1D DEPT90' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000897 1 4 '1D DEPT135' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000897 1 5 '2D [1H,13C]-HSQC' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000897 1 6 '2D [1H,13C]-HMBC' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000897 1 7 '2D [1H,1H]-COSY' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000897 1 8 '2D [1H,13C]-HMQC' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000897 1 9 '2D [1H,13C]-HSQC SW small' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000897 1 stop_ loop_ _Experiment_file.Experiment_ID _Experiment_file.Name _Experiment_file.Type _Experiment_file.Directory_path _Experiment_file.Details _Experiment_file.Entry_ID _Experiment_file.Experiment_list_ID 1 1H text/directory nmr/set01/ 'NMR experiment directory' bmse000897 1 1 00.png image/png nmr/set01/spectra/1H 'Spectral image' bmse000897 1 1 01.png image/png nmr/set01/spectra/1H 'Spectral image' bmse000897 1 1 02.png image/png nmr/set01/spectra/1H 'Spectral image' bmse000897 1 2 HH_TOCSY text/directory nmr/set01/ 'NMR experiment directory' bmse000897 1 2 00.png image/png nmr/set01/spectra/HH_TOCSY 'Spectral image' bmse000897 1 2 01.png image/png nmr/set01/spectra/HH_TOCSY 'Spectral image' bmse000897 1 3 DEPT_90 text/directory nmr/set01/ 'NMR experiment directory' bmse000897 1 3 00.png image/png nmr/set01/spectra/DEPT_90 'Spectral image' bmse000897 1 3 01.png image/png nmr/set01/spectra/DEPT_90 'Spectral image' bmse000897 1 4 DEPT_135 text/directory nmr/set01/ 'NMR experiment directory' bmse000897 1 4 00.png image/png nmr/set01/spectra/DEPT_135 'Spectral image' bmse000897 1 4 01.png image/png nmr/set01/spectra/DEPT_135 'Spectral image' bmse000897 1 5 1H_13C_HSQC text/directory nmr/set01/ 'NMR experiment directory' bmse000897 1 5 00.png image/png nmr/set01/spectra/1H_13C_HSQC 'Spectral image' bmse000897 1 5 01.png image/png nmr/set01/spectra/1H_13C_HSQC 'Spectral image' bmse000897 1 6 1H_13C_HMBC text/directory nmr/set01/ 'NMR experiment directory' bmse000897 1 6 00.png image/png nmr/set01/spectra/1H_13C_HMBC 'Spectral image' bmse000897 1 6 01.png image/png nmr/set01/spectra/1H_13C_HMBC 'Spectral image' bmse000897 1 7 HH_COSY text/directory nmr/set01/ 'NMR experiment directory' bmse000897 1 7 00.png image/png nmr/set01/spectra/HH_COSY 'Spectral image' bmse000897 1 7 01.png image/png nmr/set01/spectra/HH_COSY 'Spectral image' bmse000897 1 8 1H_13C_HMQC text/directory nmr/set01/ 'NMR experiment directory' bmse000897 1 8 00.png image/png nmr/set01/spectra/1H_13C_HMQC 'Spectral image' bmse000897 1 8 01.png image/png nmr/set01/spectra/1H_13C_HMQC 'Spectral image' bmse000897 1 9 1H_13C_HSQC_SW_small text/directory nmr/set01/ 'NMR experiment directory' bmse000897 1 9 00.png image/png nmr/set01/spectra/1H_13C_HSQC_SW_small 'Spectral image' bmse000897 1 9 01.png image/png nmr/set01/spectra/1H_13C_HSQC_SW_small 'Spectral image' bmse000897 1 stop_ save_ #################### # NMR parameters # #################### ############################## # Assigned chemical shifts # ############################## ################################ # Chemical shift referencing # ################################ save_chem_shift_reference _Chem_shift_reference.Sf_category chem_shift_reference _Chem_shift_reference.Sf_framecode chem_shift_reference _Chem_shift_reference.Entry_ID bmse000897 _Chem_shift_reference.ID 1 loop_ _Chem_shift_ref.Atom_type _Chem_shift_ref.Atom_isotope_number _Chem_shift_ref.Mol_common_name _Chem_shift_ref.Atom_group _Chem_shift_ref.Chem_shift_units _Chem_shift_ref.Chem_shift_val _Chem_shift_ref.Ref_method _Chem_shift_ref.Ref_type _Chem_shift_ref.Indirect_shift_ratio _Chem_shift_ref.Entry_ID _Chem_shift_ref.Chem_shift_reference_ID H 1 DSS 'methyl protons' ppm 0.00 internal direct 1.000000000 bmse000897 1 C 13 DSS 'methyl carbons' ppm 0.00 internal direct 1.000000000 bmse000897 1 stop_ save_ ################################### # Assigned chemical shift lists # ################################### ################################################################### # Chemical Shift Ambiguity Index Value Definitions # # # # The values other than 1 are used for those atoms with different # # chemical shifts that cannot be assigned to stereospecific atoms # # or to specific residues or chains. # # # # Index Value Definition # # # # 1 Unique (including isolated methyl protons, # # geminal atoms, and geminal methyl # # groups with identical chemical shifts) # # (e.g. ILE HD11, HD12, HD13 protons) # # 2 Ambiguity of geminal atoms or geminal methyl # # proton groups (e.g. ASP HB2 and HB3 # # protons, LEU CD1 and CD2 carbons, or # # LEU HD11, HD12, HD13 and HD21, HD22, # # HD23 methyl protons) # # 3 Aromatic atoms on opposite sides of # # symmetrical rings (e.g. TYR HE1 and HE2 # # protons) # # 4 Intraresidue ambiguities (e.g. LYS HG and # # HD protons or TRP HZ2 and HZ3 protons) # # 5 Interresidue ambiguities (LYS 12 vs. LYS 27) # # 6 Intermolecular ambiguities (e.g. ASP 31 CA # # in monomer 1 and ASP 31 CA in monomer 2 # # of an asymmetrical homodimer, duplex # # DNA assignments, or other assignments # # that may apply to atoms in one or more # # molecule in the molecular assembly) # # 9 Ambiguous, specific ambiguity not defined # # # ################################################################### save_assigned_chemical_shifts _Assigned_chem_shift_list.Sf_category assigned_chemical_shifts _Assigned_chem_shift_list.Sf_framecode assigned_chemical_shifts _Assigned_chem_shift_list.Entry_ID bmse000897 _Assigned_chem_shift_list.ID 1 _Assigned_chem_shift_list.Sample_condition_list_ID 1 _Assigned_chem_shift_list.Sample_condition_list_label $sample_conditions_1 _Assigned_chem_shift_list.Chem_shift_reference_ID 1 _Assigned_chem_shift_list.Chem_shift_reference_label $chem_shift_reference _Assigned_chem_shift_list.Details 'The chemical shift assignments have been taken from BMRB entry bmse000019' loop_ _Atom_chem_shift.ID _Atom_chem_shift.Entity_ID _Atom_chem_shift.Comp_index_ID _Atom_chem_shift.Comp_ID _Atom_chem_shift.Atom_ID _Atom_chem_shift.Atom_type _Atom_chem_shift.Atom_isotope_number _Atom_chem_shift.Val _Atom_chem_shift.Ambiguity_code _Atom_chem_shift.Auth_atom_ID _Atom_chem_shift.Entry_ID _Atom_chem_shift.Assigned_chem_shift_list_ID 1 1 1 1 C5 C 13 176.975 1 C1 bmse000897 1 2 1 1 1 C4 C 13 56.799 1 C2 bmse000897 1 3 1 1 1 C2 C 13 30.154 1 C3 bmse000897 1 4 1 1 1 C1 C 13 25.462 1 C4 bmse000897 1 5 1 1 1 C3 C 13 41.565 1 C5 bmse000897 1 6 1 1 1 H16 H 1 3.776 1 H15 bmse000897 1 7 1 1 1 H12 H 1 1.933 1 H16 bmse000897 1 8 1 1 1 H13 H 1 1.933 1 H17 bmse000897 1 9 1 1 1 H10 H 1 1.785 1 H18 bmse000897 1 10 1 1 1 H11 H 1 1.785 1 H19 bmse000897 1 11 1 1 1 H14 H 1 3.043 1 H20 bmse000897 1 12 1 1 1 H15 H 1 3.043 1 H21 bmse000897 1 stop_ save_ ######################### # Spectral peak lists # ######################### save_spectral_peak_1H _Spectral_peak_list.Sf_category spectral_peak_list _Spectral_peak_list.Sf_framecode spectral_peak_1H _Spectral_peak_list.Entry_ID bmse000897 _Spectral_peak_list.ID 1 _Spectral_peak_list.Sample_ID 1 _Spectral_peak_list.Sample_label $sample_1 _Spectral_peak_list.Sample_condition_list_ID 1 _Spectral_peak_list.Sample_condition_list_label $sample_conditions_1 _Spectral_peak_list.Experiment_ID 1 _Spectral_peak_list.Experiment_name '1D 1H' _Spectral_peak_list.Number_of_spectral_dimensions 1 loop_ _Spectral_dim.ID _Spectral_dim.Atom_type _Spectral_dim.Atom_isotope_number _Spectral_dim.Spectral_region _Spectral_dim.Sweep_width _Spectral_dim.Entry_ID _Spectral_dim.Spectral_peak_list_ID 1 H 1 'Full H' 9615.38461538462 bmse000897 1 stop_ loop_ _Spectral_peak_software.Software_ID _Spectral_peak_software.Software_label _Spectral_peak_software.Entry_ID _Spectral_peak_software.Spectral_peak_list_ID 1 $software_1 bmse000897 1 stop_ loop_ _Spectral_transition.ID _Spectral_transition.Entry_ID _Spectral_transition.Spectral_peak_list_ID 1 bmse000897 1 2 bmse000897 1 3 bmse000897 1 4 bmse000897 1 5 bmse000897 1 6 bmse000897 1 7 bmse000897 1 8 bmse000897 1 9 bmse000897 1 10 bmse000897 1 11 bmse000897 1 12 bmse000897 1 13 bmse000897 1 14 bmse000897 1 15 bmse000897 1 16 bmse000897 1 17 bmse000897 1 18 bmse000897 1 19 bmse000897 1 20 bmse000897 1 21 bmse000897 1 22 bmse000897 1 23 bmse000897 1 24 bmse000897 1 25 bmse000897 1 26 bmse000897 1 27 bmse000897 1 stop_ loop_ _Spectral_transition_general_char.Spectral_transition_ID _Spectral_transition_general_char.Intensity_val _Spectral_transition_general_char.Measurement_method _Spectral_transition_general_char.Entry_ID _Spectral_transition_general_char.Spectral_peak_list_ID 1 3.83 Height bmse000897 1 2 7.70 Height bmse000897 1 3 3.88 Height bmse000897 1 4 7.92 Height bmse000897 1 5 15.00 Height bmse000897 1 6 8.47 Height bmse000897 1 7 1.60 Height bmse000897 1 8 3.52 Height bmse000897 1 9 5.00 Height bmse000897 1 10 5.28 Height bmse000897 1 11 4.12 Height bmse000897 1 12 2.98 Height bmse000897 1 13 2.41 Height bmse000897 1 14 1.36 Height bmse000897 1 15 1.49 Height bmse000897 1 16 1.34 Height bmse000897 1 17 1.83 Height bmse000897 1 18 1.64 Height bmse000897 1 19 1.59 Height bmse000897 1 20 1.66 Height bmse000897 1 21 1.12 Height bmse000897 1 22 1.45 Height bmse000897 1 23 1.88 Height bmse000897 1 24 2.09 Height bmse000897 1 25 1.46 Height bmse000897 1 26 1.48 Height bmse000897 1 27 1.24 Height bmse000897 1 stop_ loop_ _Spectral_transition_char.Spectral_transition_ID _Spectral_transition_char.Spectral_dim_ID _Spectral_transition_char.Chem_shift_val _Spectral_transition_char.Entry_ID _Spectral_transition_char.Spectral_peak_list_ID 1 1 3.7840 bmse000897 1 2 1 3.7739 bmse000897 1 3 1 3.7638 bmse000897 1 4 1 3.0530 bmse000897 1 5 1 3.0402 bmse000897 1 6 1 3.0277 bmse000897 1 7 1 1.9608 bmse000897 1 8 1 1.9508 bmse000897 1 9 1 1.9428 bmse000897 1 10 1 1.9325 bmse000897 1 11 1 1.9263 bmse000897 1 12 1 1.9229 bmse000897 1 13 1 1.9164 bmse000897 1 14 1 1.8500 bmse000897 1 15 1 1.8382 bmse000897 1 16 1 1.8345 bmse000897 1 17 1 1.8278 bmse000897 1 18 1 1.8228 bmse000897 1 19 1 1.8169 bmse000897 1 20 1 1.8106 bmse000897 1 21 1 1.7990 bmse000897 1 22 1 1.7635 bmse000897 1 23 1 1.7536 bmse000897 1 24 1 1.7411 bmse000897 1 25 1 1.7359 bmse000897 1 26 1 1.7300 bmse000897 1 27 1 1.7242 bmse000897 1 stop_ save_