data_bmse010047 ####################### # Entry information # ####################### save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID bmse010047 _Entry.Title Vanillyl_B_D_Glucoside _Entry.Version_type update _Entry.Submission_date 2009-05-26 _Entry.Accession_date 2009-09-01 _Entry.Last_release_date 2013-04-05 _Entry.Original_release_date 2009-09-25 _Entry.Origination author _Entry.NMR_STAR_version 3.1.1.31 _Entry.Original_NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.DOI 10.13018/BMSE010047 _Entry.Details ? _Entry.BMRB_internal_directory_name Vanillyl_B_D_Glucoside loop_ _Entry_author.Ordinal _Entry_author.Given_name _Entry_author.Family_name _Entry_author.First_initial _Entry_author.Middle_initials _Entry_author.Family_title _Entry_author.Entry_ID 1 Mike Mozuch M. ? ? bmse010047 2 John Ralph ? ? ? bmse010047 3 Sally Ralph ? ? ? bmse010047 stop_ loop_ _Entry_src.ID _Entry_src.Project_name _Entry_src.Organization_full_name _Entry_src.Organization_initials _Entry_src.Entry_ID 1 'NMR Database of Lignin and Cell Wall Model Compounds' 'United States Department of Agriculture' USDA bmse010047 stop_ loop_ _Data_set.Type _Data_set.Count _Data_set.Entry_ID assigned_chemical_shifts 2 bmse010047 stop_ loop_ _Datum.Type _Datum.Count _Datum.Entry_ID '13C chemical shifts' 28 bmse010047 stop_ loop_ _Release.Release_number _Release.Format_type _Release.Format_version _Release.Date _Release.Submission_date _Release.Type _Release.Author _Release.Detail _Release.Entry_ID 1 . . 2009-09-25 2009-05-26 original Author 'Original spectra from USDA' bmse010047 2 . . 2009-11-11 2009-05-26 update BMRB 'added author and source information' bmse010047 3 . . 2010-10-08 2009-05-26 update BMRB 'Removed empty loops for database compliance' bmse010047 4 . . 2010-12-01 2009-05-26 update BMRB 'Set correct NMR STAR version' bmse010047 5 . . 2011-04-04 2009-05-26 update BMRB 'Added Provenance tag to chem_comp' bmse010047 6 . . 2011-09-07 2009-05-26 update BMRB 'Ensured correct reference IDs' bmse010047 7 . . 2011-09-09 2009-05-26 update BMRB 'Brought up to date with latest Dictionary' bmse010047 8 . . 2011-12-14 2009-05-26 update BMRB 'Set Assembly.Name to match Chem_comp.name' bmse010047 9 . . 2011-12-16 2009-05-26 update BMRB 'Standardized solvent' bmse010047 10 . . 2012-02-24 2009-05-26 update BMRB 'Set Raw_data_flag to no, since there are no raw data' bmse010047 11 . . 2012-09-13 2009-05-26 update BMRB 'Added PubChem SID 111677941 to database loop' bmse010047 12 . . 2013-04-05 2009-05-26 update BMRB 'Adding molecule category to chem_comp Details' bmse010047 13 . . 2017-10-12 2017-10-12 update BMRB 'Remediated Experiment_file loop if present and standardized mol and png file tags.' bmse010047 14 . . 2018-07-10 2017-10-12 update BMRB 'InChI numbering updated according to ALATIS' bmse010047 stop_ save_ ############### # Citations # ############### save_citation_1 _Citation.Sf_category citations _Citation.Sf_framecode citation_1 _Citation.Entry_ID bmse010047 _Citation.ID 1 _Citation.Class 'entry citation' _Citation.PubMed_ID ? _Citation.Title 'NMR Database of Lignin and Cell Wall Model Compounds.' _Citation.Status published _Citation.Type internet _Citation.WWW_URL http://ars.usda.gov/Services/docs.htm?docid=10491 _Citation.Year 2004 _Citation.Details ? loop_ _Citation_author.Ordinal _Citation_author.Given_name _Citation_author.Family_name _Citation_author.First_initial _Citation_author.Middle_initials _Citation_author.Family_title _Citation_author.Entry_ID _Citation_author.Citation_ID 1 Sally Ralph ? A. ? bmse010047 1 2 John Ralph ? ? ? bmse010047 1 3 Larry Landucci ? L. ? bmse010047 1 stop_ save_ ############################################# # Molecular system (assembly) description # ############################################# save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID bmse010047 _Assembly.ID 1 _Assembly.Name Vanillyl-B-D-Glucoside _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions ? _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state 'not reported' loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 Vanillyl-B-D-Glucoside 1 $Vanillyl-B-D-Glucoside yes native no no ? ? ? bmse010047 1 stop_ save_ #################################### # Biological polymers and ligands # #################################### save_Vanillyl-B-D-Glucoside _Entity.Sf_category entity _Entity.Sf_framecode Vanillyl-B-D-Glucoside _Entity.Entry_ID bmse010047 _Entity.ID 1 _Entity.BMRB_code ? _Entity.Name Vanillyl-B-D-Glucoside _Entity.Type non-polymer _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Paramagnetic no _Entity.Thiol_state 'not reported' loop_ _Entity_comp_index.ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 1 $chem_comp_1 bmse010047 1 stop_ save_ #################### # Natural source # #################### save_natural_source _Entity_natural_src_list.Sf_category natural_source _Entity_natural_src_list.Sf_framecode natural_source _Entity_natural_src_list.Entry_ID bmse010047 _Entity_natural_src_list.ID 1 loop_ _Entity_natural_src.ID _Entity_natural_src.Entity_ID _Entity_natural_src.Entity_label _Entity_natural_src.Entity_chimera_segment_ID _Entity_natural_src.NCBI_taxonomy_ID _Entity_natural_src.Type _Entity_natural_src.Common _Entity_natural_src.Organism_name_scientific _Entity_natural_src.Organism_name_common _Entity_natural_src.Organism_acronym _Entity_natural_src.ICTVdb_decimal_code _Entity_natural_src.Superkingdom _Entity_natural_src.Kingdom _Entity_natural_src.Genus _Entity_natural_src.Species _Entity_natural_src.Strain _Entity_natural_src.Variant _Entity_natural_src.Subvariant _Entity_natural_src.Organ _Entity_natural_src.Tissue _Entity_natural_src.Tissue_fraction _Entity_natural_src.Cell_line _Entity_natural_src.Cell_type _Entity_natural_src.ATCC_number _Entity_natural_src.Organelle _Entity_natural_src.Cellular_location _Entity_natural_src.Fragment _Entity_natural_src.Fraction _Entity_natural_src.Secretion _Entity_natural_src.Plasmid _Entity_natural_src.Plasmid_details _Entity_natural_src.Gene_mnemonic _Entity_natural_src.Dev_stage _Entity_natural_src.Details _Entity_natural_src.Citation_ID _Entity_natural_src.Citation_label _Entity_natural_src.Entry_ID _Entity_natural_src.Entity_natural_src_list_ID 1 1 $Vanillyl-B-D-Glucoside . n/a 'multiple natural sources' yes 'not applicable' n/a . . Eukaryota Viridiplantae n/a n/a . . . . . . . . . . . . . . . . . . . . . bmse010047 1 stop_ save_ ######################### # Experimental source # ######################### save_experimental_source _Entity_experimental_src_list.Sf_category experimental_source _Entity_experimental_src_list.Sf_framecode experimental_source _Entity_experimental_src_list.Entry_ID bmse010047 _Entity_experimental_src_list.ID 1 loop_ _Entity_experimental_src.ID _Entity_experimental_src.Entity_ID _Entity_experimental_src.Entity_label _Entity_experimental_src.Entity_chimera_segment_ID _Entity_experimental_src.Production_method _Entity_experimental_src.Host_org_scientific_name _Entity_experimental_src.Host_org_name_common _Entity_experimental_src.Host_org_details _Entity_experimental_src.Host_org_NCBI_taxonomy_ID _Entity_experimental_src.Host_org_genus _Entity_experimental_src.Host_org_species _Entity_experimental_src.Host_org_strain _Entity_experimental_src.Host_org_variant _Entity_experimental_src.Host_org_subvariant _Entity_experimental_src.Host_org_organ _Entity_experimental_src.Host_org_tissue _Entity_experimental_src.Host_org_tissue_fraction _Entity_experimental_src.Host_org_cell_line _Entity_experimental_src.Host_org_cell_type _Entity_experimental_src.Host_org_cellular_location _Entity_experimental_src.Host_org_organelle _Entity_experimental_src.Host_org_gene _Entity_experimental_src.Host_org_culture_collection _Entity_experimental_src.Host_org_ATCC_number _Entity_experimental_src.Vector_type _Entity_experimental_src.PDBview_host_org_vector_name _Entity_experimental_src.PDBview_plasmid_name _Entity_experimental_src.Vector_name _Entity_experimental_src.Vector_details _Entity_experimental_src.Vendor_name _Entity_experimental_src.Host_org_dev_stage _Entity_experimental_src.Details _Entity_experimental_src.Citation_ID _Entity_experimental_src.Citation_label _Entity_experimental_src.Entry_ID _Entity_experimental_src.Entity_experimental_src_list_ID 1 1 $Vanillyl-B-D-Glucoside . 'chemical synthesis' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . bmse010047 1 stop_ save_ ################################# # Polymer residues and ligands # ################################# save_chem_comp_1 _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_1 _Chem_comp.Entry_ID bmse010047 _Chem_comp.ID 1 _Chem_comp.Provenance BMRB _Chem_comp.Name Vanillyl-B-D-Glucoside _Chem_comp.Type non-polymer _Chem_comp.BMRB_code ? _Chem_comp.PDB_code ? _Chem_comp.InChI_code InChI=1S/C14H20O8/c1-20-9-4-7(2-3-8(9)16)6-21-14-13(19)12(18)11(17)10(5-15)22-14/h2-4,10-19H,5-6H2,1H3/t10-,11-,12+,13-,14-/m1/s1 _Chem_comp.Mon_nstd_flag ? _Chem_comp.Std_deriv_one_letter_code ? _Chem_comp.Std_deriv_three_letter_code ? _Chem_comp.Std_deriv_BMRB_code ? _Chem_comp.Std_deriv_PDB_code ? _Chem_comp.Formal_charge ? _Chem_comp.Paramagnetic no _Chem_comp.Aromatic yes _Chem_comp.Formula 'C14 H20 O8' _Chem_comp.Formula_weight 316.3038 _Chem_comp.Formula_mono_iso_wt_nat 316.1158176188 _Chem_comp.Formula_mono_iso_wt_13C 330.162785348 _Chem_comp.Formula_mono_iso_wt_15N 316.1158176188 _Chem_comp.Formula_mono_iso_wt_13C_15N 330.162785348 _Chem_comp.Image_file_name bmse010047.png _Chem_comp.Image_file_format png _Chem_comp.Topo_file_name ? _Chem_comp.Topo_file_format ? _Chem_comp.Struct_file_name bmse010047.mol _Chem_comp.Struct_file_format mol _Chem_comp.Stereochem_param_file_name ? _Chem_comp.Details 'Misc. Compounds' _Chem_comp.DB_query_date ? _Chem_comp.DB_last_query_revised_last_date ? loop_ _Chem_comp_common_name.Name _Chem_comp_common_name.Type _Chem_comp_common_name.Entry_ID _Chem_comp_common_name.Comp_ID Vanillyl-B-D-Glucoside synonym bmse010047 1 2-(4-Hydroxy-3-methoxybenzyloxy)-6-hydroxymethyltetrahydropyran-3,4,5-triol synonym bmse010047 1 stop_ loop_ _Chem_comp_descriptor.Descriptor _Chem_comp_descriptor.Type _Chem_comp_descriptor.Program _Chem_comp_descriptor.Program_version _Chem_comp_descriptor.Entry_ID _Chem_comp_descriptor.Comp_ID ; InChI=1/C14H20O8/c1-20-9-4-7(2-3-8(9)16)6-21-14-13(19)12(18)11(17)10(5-15)22-14/h2-4,10-19H,5-6H2,1H3/t10-,11-,12+,13-,14-/m1/s1 ; INCHI na na bmse010047 1 InChI=1S/C14H20O8/c1-20-9-4-7(2-3-8(9)16)6-21-14-13(19)12(18)11(17)10(5-15)22-14/h2-4,10-19H,5-6H2,1H3/t10-,11-,12+,13-,14-/m1/s1 INCHI ALATIS 3.003 bmse010047 1 stop_ loop_ _Chem_comp_systematic_name.Name _Chem_comp_systematic_name.Naming_system _Chem_comp_systematic_name.Entry_ID _Chem_comp_systematic_name.Comp_ID Vanillyl-B-D-Glucoside Beilstein bmse010047 1 stop_ loop_ _Chem_comp_SMILES.Type _Chem_comp_SMILES.String _Chem_comp_SMILES.Entry_ID _Chem_comp_SMILES.Comp_ID Canonical COC1=C(C=CC(=C1)CO[C@H]2[C@@H]([C@H]([C@@H]([C@@H](CO)O2)O)O)O)O bmse010047 1 Isomeric COC1=C(C=CC(=C1)CO[C@H]2[C@@H]([C@H]([C@@H]([C@@H](CO)O2)O)O)O)O bmse010047 1 stop_ loop_ _Chem_comp_atom.Atom_ID _Chem_comp_atom.Auth_atom_ID _Chem_comp_atom.Type_symbol _Chem_comp_atom.Stereo_config _Chem_comp_atom.Charge _Chem_comp_atom.Oxidation_number _Chem_comp_atom.Unpaired_electron_number _Chem_comp_atom.Drawing_2D_coord_x _Chem_comp_atom.Drawing_2D_coord_y _Chem_comp_atom.Model_Cartn_x _Chem_comp_atom.Model_Cartn_y _Chem_comp_atom.Model_Cartn_z _Chem_comp_atom.PDBX_ordinal _Chem_comp_atom.Entry_ID _Chem_comp_atom.Comp_ID C1 OMe C ? ? ? ? 302.7120 310.0000 ? ? ? 1 bmse010047 1 C2 A6 C ? ? ? ? 330.4272 198.0000 ? ? ? 2 bmse010047 1 C3 A5 C ? ? ? ? 358.1392 214.0000 ? ? ? 3 bmse010047 1 C4 A2 C ? ? ? ? 302.7120 246.0000 ? ? ? 4 bmse010047 1 C5 B6 C ? ? ? ? 164.1488 166.0000 ? ? ? 5 bmse010047 1 C6 A C ? ? ? ? 275.0000 198.0000 ? ? ? 6 bmse010047 1 C7 A1 C ? ? ? ? 302.7120 214.0000 ? ? ? 7 bmse010047 1 C8 A4 C ? ? ? ? 358.1392 246.0000 ? ? ? 8 bmse010047 1 C9 A3 C ? ? ? ? 330.4272 262.0000 ? ? ? 9 bmse010047 1 C10 B5 C ? ? ? ? 191.8608 150.0000 ? ? ? 10 bmse010047 1 C11 B4 C ? ? ? ? 191.8608 118.0000 ? ? ? 11 bmse010047 1 C12 B3 C ? ? ? ? 219.5760 102.0000 ? ? ? 12 bmse010047 1 C13 B2 C ? ? ? ? 247.2880 118.0000 ? ? ? 13 bmse010047 1 C14 B1 C ? ? ? ? 247.2880 150.0000 ? ? ? 14 bmse010047 1 O15 ? O ? ? ? ? 164.1488 198.0000 ? ? ? 15 bmse010047 1 O16 ? O ? ? ? ? 385.8512 262.0000 ? ? ? 16 bmse010047 1 O17 ? O ? ? ? ? 164.1488 102.0000 ? ? ? 17 bmse010047 1 O18 ? O ? ? ? ? 219.5760 70.0000 ? ? ? 18 bmse010047 1 O19 ? O ? ? ? ? 275.0000 102.0000 ? ? ? 19 bmse010047 1 O20 ? O ? ? ? ? 330.4272 294.0000 ? ? ? 20 bmse010047 1 O21 ? O ? ? ? ? 275.0000 166.0000 ? ? ? 21 bmse010047 1 O22 ? O ? ? ? ? 219.5760 166.0000 ? ? ? 22 bmse010047 1 H23 ? H ? ? ? ? 312.6314 327.1823 ? ? ? 23 bmse010047 1 H24 ? H ? ? ? ? 285.5297 319.9194 ? ? ? 24 bmse010047 1 H25 ? H ? ? ? ? 292.7926 292.8177 ? ? ? 25 bmse010047 1 H26 ? H ? ? ? ? 330.4277 178.1600 ? ? ? 26 bmse010047 1 H27 ? H ? ? ? ? 375.3212 204.0801 ? ? ? 27 bmse010047 1 H28 ? H ? ? ? ? 285.5302 255.9203 ? ? ? 28 bmse010047 1 H29 ? H ? ? ? ? 144.6102 169.4453 ? ? ? 29 bmse010047 1 H30 ? H ? ? ? ? 157.3630 147.3566 ? ? ? 30 bmse010047 1 H31 ? H ? ? ? ? 268.2142 216.6434 ? ? ? 31 bmse010047 1 H32 ? H ? ? ? ? 255.4614 194.5547 ? ? ? 32 bmse010047 1 H33 ? H ? ? ? ? 191.8613 169.8400 ? ? ? 33 bmse010047 1 H34 ? H ? ? ? ? 191.8613 98.1600 ? ? ? 34 bmse010047 1 H35 ? H ? ? ? ? 236.7580 92.0801 ? ? ? 35 bmse010047 1 H36 ? H ? ? ? ? 264.4700 127.9199 ? ? ? 36 bmse010047 1 H37 ? H ? ? ? ? 264.4700 140.0801 ? ? ? 37 bmse010047 1 H38 ? H ? ? ? ? 181.3307 207.9200 ? ? ? 38 bmse010047 1 H39 ? H ? ? ? ? 403.0333 252.0802 ? ? ? 39 bmse010047 1 H40 ? H ? ? ? ? 146.9667 111.9198 ? ? ? 40 bmse010047 1 H41 ? H ? ? ? ? 202.3941 60.0800 ? ? ? 41 bmse010047 1 H42 ? H ? ? ? ? 274.9998 82.1600 ? ? ? 42 bmse010047 1 stop_ loop_ _Atom_nomenclature.Atom_ID _Atom_nomenclature.Atom_name _Atom_nomenclature.Naming_system _Atom_nomenclature.Entry_ID _Atom_nomenclature.Comp_ID C1 C1 BMRB bmse010047 1 C2 C2 BMRB bmse010047 1 C3 C3 BMRB bmse010047 1 C4 C4 BMRB bmse010047 1 C5 C5 BMRB bmse010047 1 C6 C6 BMRB bmse010047 1 C7 C7 BMRB bmse010047 1 C8 C8 BMRB bmse010047 1 C9 C9 BMRB bmse010047 1 C10 C10 BMRB bmse010047 1 C11 C11 BMRB bmse010047 1 C12 C12 BMRB bmse010047 1 C13 C13 BMRB bmse010047 1 C14 C14 BMRB bmse010047 1 O15 O15 BMRB bmse010047 1 O16 O16 BMRB bmse010047 1 O17 O17 BMRB bmse010047 1 O18 O18 BMRB bmse010047 1 O19 O19 BMRB bmse010047 1 O20 O20 BMRB bmse010047 1 O21 O21 BMRB bmse010047 1 O22 O22 BMRB bmse010047 1 H23 H23 BMRB bmse010047 1 H24 H24 BMRB bmse010047 1 H25 H25 BMRB bmse010047 1 H26 H26 BMRB bmse010047 1 H27 H27 BMRB bmse010047 1 H28 H28 BMRB bmse010047 1 H29 H29 BMRB bmse010047 1 H30 H30 BMRB bmse010047 1 H31 H31 BMRB bmse010047 1 H32 H32 BMRB bmse010047 1 H33 H33 BMRB bmse010047 1 H34 H34 BMRB bmse010047 1 H35 H35 BMRB bmse010047 1 H36 H36 BMRB bmse010047 1 H37 H37 BMRB bmse010047 1 H38 H38 BMRB bmse010047 1 H39 H39 BMRB bmse010047 1 H40 H40 BMRB bmse010047 1 H41 H41 BMRB bmse010047 1 H42 H42 BMRB bmse010047 1 C1 C1 ALATIS bmse010047 1 C2 C2 ALATIS bmse010047 1 C3 C3 ALATIS bmse010047 1 C4 C4 ALATIS bmse010047 1 C5 C5 ALATIS bmse010047 1 C6 C6 ALATIS bmse010047 1 C7 C7 ALATIS bmse010047 1 C8 C8 ALATIS bmse010047 1 C9 C9 ALATIS bmse010047 1 C10 C10 ALATIS bmse010047 1 C11 C11 ALATIS bmse010047 1 C12 C12 ALATIS bmse010047 1 C13 C13 ALATIS bmse010047 1 C14 C14 ALATIS bmse010047 1 O15 O15 ALATIS bmse010047 1 O16 O16 ALATIS bmse010047 1 O17 O17 ALATIS bmse010047 1 O18 O18 ALATIS bmse010047 1 O19 O19 ALATIS bmse010047 1 O20 O20 ALATIS bmse010047 1 O21 O21 ALATIS bmse010047 1 O22 O22 ALATIS bmse010047 1 H23 H23 ALATIS bmse010047 1 H24 H24 ALATIS bmse010047 1 H25 H25 ALATIS bmse010047 1 H26 H26 ALATIS bmse010047 1 H27 H27 ALATIS bmse010047 1 H28 H28 ALATIS bmse010047 1 H29 H29 ALATIS bmse010047 1 H30 H30 ALATIS bmse010047 1 H31 H31 ALATIS bmse010047 1 H32 H32 ALATIS bmse010047 1 H33 H33 ALATIS bmse010047 1 H34 H34 ALATIS bmse010047 1 H35 H35 ALATIS bmse010047 1 H36 H36 ALATIS bmse010047 1 H37 H37 ALATIS bmse010047 1 H38 H38 ALATIS bmse010047 1 H39 H39 ALATIS bmse010047 1 H40 H40 ALATIS bmse010047 1 H41 H41 ALATIS bmse010047 1 H42 H42 ALATIS bmse010047 1 stop_ loop_ _Chem_comp_bond.ID _Chem_comp_bond.Type _Chem_comp_bond.Value_order _Chem_comp_bond.Atom_ID_1 _Chem_comp_bond.Atom_ID_2 _Chem_comp_bond.Details _Chem_comp_bond.Entry_ID _Chem_comp_bond.Comp_ID 1 covalent SING C1 O20 ? bmse010047 1 2 covalent DOUB C2 C3 ? bmse010047 1 3 covalent SING C2 C7 ? bmse010047 1 4 covalent SING C3 C8 ? bmse010047 1 5 covalent DOUB C4 C7 ? bmse010047 1 6 covalent SING C4 C9 ? bmse010047 1 7 covalent SING C10 C5 ? bmse010047 1 8 covalent SING C5 O15 ? bmse010047 1 9 covalent SING C6 C7 ? bmse010047 1 10 covalent SING C6 O21 ? bmse010047 1 11 covalent DOUB C8 C9 ? bmse010047 1 12 covalent SING C8 O16 ? bmse010047 1 13 covalent SING C9 O20 ? bmse010047 1 14 covalent SING C10 C11 ? bmse010047 1 15 covalent SING C10 O22 ? bmse010047 1 16 covalent SING C11 C12 ? bmse010047 1 17 covalent SING C11 O17 ? bmse010047 1 18 covalent SING C12 C13 ? bmse010047 1 19 covalent SING C12 O18 ? bmse010047 1 20 covalent SING C13 C14 ? bmse010047 1 21 covalent SING C13 O19 ? bmse010047 1 22 covalent SING C14 O21 ? bmse010047 1 23 covalent SING C14 O22 ? bmse010047 1 24 covalent SING C1 H23 ? bmse010047 1 25 covalent SING C1 H24 ? bmse010047 1 26 covalent SING C1 H25 ? bmse010047 1 27 covalent SING C2 H26 ? bmse010047 1 28 covalent SING C3 H27 ? bmse010047 1 29 covalent SING C4 H28 ? bmse010047 1 30 covalent SING C5 H29 ? bmse010047 1 31 covalent SING C5 H30 ? bmse010047 1 32 covalent SING C6 H31 ? bmse010047 1 33 covalent SING C6 H32 ? bmse010047 1 34 covalent SING C10 H33 ? bmse010047 1 35 covalent SING C11 H34 ? bmse010047 1 36 covalent SING C12 H35 ? bmse010047 1 37 covalent SING C13 H36 ? bmse010047 1 38 covalent SING C14 H37 ? bmse010047 1 39 covalent SING O15 H38 ? bmse010047 1 40 covalent SING O16 H39 ? bmse010047 1 41 covalent SING O17 H40 ? bmse010047 1 42 covalent SING O18 H41 ? bmse010047 1 43 covalent SING O19 H42 ? bmse010047 1 stop_ loop_ _Chem_comp_db_link.Author_supplied _Chem_comp_db_link.Database_code _Chem_comp_db_link.Accession_code _Chem_comp_db_link.Accession_code_type _Chem_comp_db_link.Entry_mol_code _Chem_comp_db_link.Entry_mol_name _Chem_comp_db_link.Entry_experimental_method _Chem_comp_db_link.Entry_relation_type _Chem_comp_db_link.Entry_details _Chem_comp_db_link.Entry_ID _Chem_comp_db_link.Comp_ID no PubChem 111677941 sid ? Vanillyl-B-D-Glucoside ? 'matching entry' ? bmse010047 1 yes USDA_NMR_database 107 'Compound Number' ? Vanillyl-B-D-Glucoside ? 'matching entry' ? bmse010047 1 stop_ loop_ _Chem_comp_citation.Citation_ID _Chem_comp_citation.Citation_label _Chem_comp_citation.Entry_ID _Chem_comp_citation.Comp_ID 1 $citation_1 bmse010047 1 stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_1 _Sample.Sf_category sample _Sample.Sf_framecode sample_1 _Sample.Entry_ID bmse010047 _Sample.ID 1 _Sample.Type solution loop_ _Sample_component.ID _Sample_component.Mol_common_name _Sample_component.Isotopic_labeling _Sample_component.Entity_ID _Sample_component.Entity_label _Sample_component.Product_ID _Sample_component.Type _Sample_component.Concentration_val _Sample_component.Concentration_val_min _Sample_component.Concentration_val_max _Sample_component.Concentration_val_units _Sample_component.Concentration_val_err _Sample_component.Vendor _Sample_component.Vendor_product_name _Sample_component.Vendor_product_code _Sample_component.Entry_ID _Sample_component.Sample_ID 1 Vanillyl-B-D-Glucoside 'natural abundance' 1 $Vanillyl-B-D-Glucoside ? Solute 40 ? ? mg/ml ? 'Mike Mozuch' Vanillyl-B-D-Glucoside n/a bmse010047 1 2 acetone '100% deuterated' 1 ? ? Solvent 100 ? ? % ? ? ? ? bmse010047 1 stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_2 _Sample.Sf_category sample _Sample.Sf_framecode sample_2 _Sample.Entry_ID bmse010047 _Sample.ID 2 _Sample.Type solution loop_ _Sample_component.ID _Sample_component.Mol_common_name _Sample_component.Isotopic_labeling _Sample_component.Entity_ID _Sample_component.Entity_label _Sample_component.Product_ID _Sample_component.Type _Sample_component.Concentration_val _Sample_component.Concentration_val_min _Sample_component.Concentration_val_max _Sample_component.Concentration_val_units _Sample_component.Concentration_val_err _Sample_component.Vendor _Sample_component.Vendor_product_name _Sample_component.Vendor_product_code _Sample_component.Entry_ID _Sample_component.Sample_ID 1 Vanillyl-B-D-Glucoside 'natural abundance' 1 $Vanillyl-B-D-Glucoside ? Solute 40 ? ? mg/ml ? 'Mike Mozuch' Vanillyl-B-D-Glucoside n/a bmse010047 2 2 DMSO '100% deuterated' 1 ? ? Solvent 100 ? ? % ? ? ? ? bmse010047 2 stop_ save_ ####################### # Sample conditions # ####################### save_sample_conditions_1 _Sample_condition_list.Sf_category sample_conditions _Sample_condition_list.Sf_framecode sample_conditions_1 _Sample_condition_list.Entry_ID bmse010047 _Sample_condition_list.ID 1 loop_ _Sample_condition_variable.Type _Sample_condition_variable.Val _Sample_condition_variable.Val_err _Sample_condition_variable.Val_units _Sample_condition_variable.Entry_ID _Sample_condition_variable.Sample_condition_list_ID pH n/a ? pH bmse010047 1 temperature 297 ? K bmse010047 1 stop_ save_ ############################ # Computer software used # ############################ save_software_1 _Software.Sf_category software _Software.Sf_framecode software_1 _Software.Entry_ID bmse010047 _Software.ID 1 _Software.Name X-WINNMR _Software.Version ? _Software.Details ? loop_ _Vendor.Name _Vendor.Address _Vendor.Electronic_address _Vendor.Entry_ID _Vendor.Software_ID Bruker ? ? bmse010047 1 stop_ loop_ _Task.Task _Task.Entry_ID _Task.Software_ID Processing bmse010047 1 stop_ save_ ######################### # Experimental detail # ######################### ################################## # NMR Spectrometer definitions # ################################## save_Bruker_250 _NMR_spectrometer.Sf_category NMR_spectrometer _NMR_spectrometer.Sf_framecode Bruker_250 _NMR_spectrometer.Entry_ID bmse010047 _NMR_spectrometer.ID 1 _NMR_spectrometer.Manufacturer Bruker _NMR_spectrometer.Model WM _NMR_spectrometer.Field_strength 250 save_ ############################# # NMR applied experiments # ############################# save_experiment_list _Experiment_list.Sf_category experiment_list _Experiment_list.Sf_framecode experiment_list _Experiment_list.Entry_ID bmse010047 _Experiment_list.ID 1 _Experiment_list.Details ? loop_ _Experiment.ID _Experiment.Name _Experiment.Raw_data_flag _Experiment.NMR_spec_expt_ID _Experiment.NMR_spec_expt_label _Experiment.Sample_ID _Experiment.Sample_label _Experiment.Sample_state _Experiment.Sample_condition_list_ID _Experiment.Sample_condition_list_label _Experiment.NMR_spectrometer_ID _Experiment.NMR_spectrometer_label _Experiment.NMR_spectral_processing_ID _Experiment.NMR_spectral_processing_label _Experiment.Entry_ID _Experiment.Experiment_list_ID 1 '1D 13C' no ? ? 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_250 ? ? bmse010047 1 2 '1D 13C' no ? ? 2 $sample_2 isotropic 1 $sample_conditions_1 1 $Bruker_250 ? ? bmse010047 1 stop_ save_ #################### # NMR parameters # #################### ############################## # Assigned chemical shifts # ############################## ################################ # Chemical shift referencing # ################################ save_chem_shift_reference_1 _Chem_shift_reference.Sf_category chem_shift_reference _Chem_shift_reference.Sf_framecode chem_shift_reference_1 _Chem_shift_reference.Entry_ID bmse010047 _Chem_shift_reference.ID 1 _Chem_shift_reference.Details ? loop_ _Chem_shift_ref.Atom_type _Chem_shift_ref.Atom_isotope_number _Chem_shift_ref.Mol_common_name _Chem_shift_ref.Atom_group _Chem_shift_ref.Chem_shift_units _Chem_shift_ref.Chem_shift_val _Chem_shift_ref.Ref_method _Chem_shift_ref.Ref_type _Chem_shift_ref.Indirect_shift_ratio _Chem_shift_ref.External_ref_loc _Chem_shift_ref.External_ref_sample_geometry _Chem_shift_ref.External_ref_axis _Chem_shift_ref.Entry_ID _Chem_shift_ref.Chem_shift_reference_ID H 1 Acetone-d6 'residual solvent methyl proton' ppm 2.04 internal direct 1.000000000 ? ? ? bmse010047 1 C 13 Acetone-d6 'solvent methyl carbon' ppm 29.83 internal direct ? ? ? ? bmse010047 1 stop_ save_ #################### # NMR parameters # #################### ############################## # Assigned chemical shifts # ############################## ################################ # Chemical shift referencing # ################################ save_chem_shift_reference_2 _Chem_shift_reference.Sf_category chem_shift_reference _Chem_shift_reference.Sf_framecode chem_shift_reference_2 _Chem_shift_reference.Entry_ID bmse010047 _Chem_shift_reference.ID 2 _Chem_shift_reference.Details ? loop_ _Chem_shift_ref.Atom_type _Chem_shift_ref.Atom_isotope_number _Chem_shift_ref.Mol_common_name _Chem_shift_ref.Atom_group _Chem_shift_ref.Chem_shift_units _Chem_shift_ref.Chem_shift_val _Chem_shift_ref.Ref_method _Chem_shift_ref.Ref_type _Chem_shift_ref.Indirect_shift_ratio _Chem_shift_ref.External_ref_loc _Chem_shift_ref.External_ref_sample_geometry _Chem_shift_ref.External_ref_axis _Chem_shift_ref.Entry_ID _Chem_shift_ref.Chem_shift_reference_ID H 1 DMSO-d6 'residual solvent methyl proton' ppm 2.49 internal direct 1.000000000 ? ? ? bmse010047 2 C 13 DMSO-d6 'solvent methyl carbon' ppm 39.50 internal direct ? ? ? ? bmse010047 2 stop_ save_ ################################### # Assigned chemical shift lists # ################################### ################################################################### # Chemical Shift Ambiguity Index Value Definitions # # # # The values other than 1 are used for those atoms with different # # chemical shifts that cannot be assigned to stereospecific atoms # # or to specific residues or chains. # # # # Index Value Definition # # # # 1 Unique (including isolated methyl protons, # # geminal atoms, and geminal methyl # # groups with identical chemical shifts) # # (e.g. ILE HD11, HD12, HD13 protons) # # 2 Ambiguity of geminal atoms or geminal methyl # # proton groups (e.g. ASP HB2 and HB3 # # protons, LEU CD1 and CD2 carbons, or # # LEU HD11, HD12, HD13 and HD21, HD22, # # HD23 methyl protons) # # 3 Aromatic atoms on opposite sides of # # symmetrical rings (e.g. TYR HE1 and HE2 # # protons) # # 4 Intraresidue ambiguities (e.g. LYS HG and # # HD protons or TRP HZ2 and HZ3 protons) # # 5 Interresidue ambiguities (LYS 12 vs. LYS 27) # # 6 Intermolecular ambiguities (e.g. ASP 31 CA # # in monomer 1 and ASP 31 CA in monomer 2 # # of an asymmetrical homodimer, duplex # # DNA assignments, or other assignments # # that may apply to atoms in one or more # # molecule in the molecular assembly) # # 9 Ambiguous, specific ambiguity not defined # # # ################################################################### save_assigned_chemical_shifts_1 _Assigned_chem_shift_list.Sf_category assigned_chemical_shifts _Assigned_chem_shift_list.Sf_framecode assigned_chemical_shifts_1 _Assigned_chem_shift_list.Entry_ID bmse010047 _Assigned_chem_shift_list.ID 1 _Assigned_chem_shift_list.Sample_condition_list_ID 1 _Assigned_chem_shift_list.Sample_condition_list_label $sample_conditions_1 _Assigned_chem_shift_list.Chem_shift_reference_ID 1 _Assigned_chem_shift_list.Chem_shift_reference_label $chem_shift_reference_1 _Assigned_chem_shift_list.Error_derivation_method ? _Assigned_chem_shift_list.Details ? loop_ _Chem_shift_experiment.Experiment_ID _Chem_shift_experiment.Experiment_name _Chem_shift_experiment.Sample_ID _Chem_shift_experiment.Sample_label _Chem_shift_experiment.Entry_ID _Chem_shift_experiment.Assigned_chem_shift_list_ID 1 '1D 13C' 1 $sample_1 bmse010047 1 stop_ loop_ _Chem_shift_software.Software_ID _Chem_shift_software.Software_label _Chem_shift_software.Method_ID _Chem_shift_software.Method_label _Chem_shift_software.Entry_ID _Chem_shift_software.Assigned_chem_shift_list_ID 1 $software_1 ? ? bmse010047 1 stop_ loop_ _Atom_chem_shift.ID _Atom_chem_shift.Entity_ID _Atom_chem_shift.Comp_index_ID _Atom_chem_shift.Comp_ID _Atom_chem_shift.Atom_ID _Atom_chem_shift.Atom_type _Atom_chem_shift.Atom_isotope_number _Atom_chem_shift.Val _Atom_chem_shift.Val_err _Atom_chem_shift.Assign_fig_of_merit _Atom_chem_shift.Ambiguity_code _Atom_chem_shift.Occupancy _Atom_chem_shift.Auth_seq_ID _Atom_chem_shift.Auth_comp_ID _Atom_chem_shift.Auth_atom_ID _Atom_chem_shift.Details _Atom_chem_shift.Entry_ID _Atom_chem_shift.Assigned_chem_shift_list_ID 1 1 1 1 C1 C 13 56.30 ? ? 1 ? ? ? OMe ? bmse010047 1 2 1 1 1 C5 C 13 63.00 ? ? 1 ? ? ? B6 ? bmse010047 1 3 1 1 1 C11 C 13 70.98 ? ? 1 ? ? ? B4 ? bmse010047 1 4 1 1 1 C13 C 13 71.74 ? ? 1 ? ? ? B2 ? bmse010047 1 5 1 1 1 C10 C 13 74.90 ? ? 1 ? ? ? B5 ? bmse010047 1 6 1 1 1 C6 C 13 77.48 ? ? 1 ? ? ? A ? bmse010047 1 7 1 1 1 C12 C 13 78.02 ? ? 1 ? ? ? B3 ? bmse010047 1 8 1 1 1 C14 C 13 102.70 ? ? 1 ? ? ? B1 ? bmse010047 1 9 1 1 1 C4 C 13 112.81 ? ? 1 ? ? ? A2 ? bmse010047 1 10 1 1 1 C3 C 13 115.41 ? ? 1 ? ? ? A5 ? bmse010047 1 11 1 1 1 C2 C 13 121.77 ? ? 1 ? ? ? A6 ? bmse010047 1 12 1 1 1 C7 C 13 130.28 ? ? 1 ? ? ? A1 ? bmse010047 1 13 1 1 1 C9 C 13 147.00 ? ? 1 ? ? ? A3 ? bmse010047 1 14 1 1 1 C8 C 13 148.21 ? ? 1 ? ? ? A4 ? bmse010047 1 stop_ save_ ################################### # Assigned chemical shift lists # ################################### ################################################################### # Chemical Shift Ambiguity Index Value Definitions # # # # The values other than 1 are used for those atoms with different # # chemical shifts that cannot be assigned to stereospecific atoms # # or to specific residues or chains. # # # # Index Value Definition # # # # 1 Unique (including isolated methyl protons, # # geminal atoms, and geminal methyl # # groups with identical chemical shifts) # # (e.g. ILE HD11, HD12, HD13 protons) # # 2 Ambiguity of geminal atoms or geminal methyl # # proton groups (e.g. ASP HB2 and HB3 # # protons, LEU CD1 and CD2 carbons, or # # LEU HD11, HD12, HD13 and HD21, HD22, # # HD23 methyl protons) # # 3 Aromatic atoms on opposite sides of # # symmetrical rings (e.g. TYR HE1 and HE2 # # protons) # # 4 Intraresidue ambiguities (e.g. LYS HG and # # HD protons or TRP HZ2 and HZ3 protons) # # 5 Interresidue ambiguities (LYS 12 vs. LYS 27) # # 6 Intermolecular ambiguities (e.g. ASP 31 CA # # in monomer 1 and ASP 31 CA in monomer 2 # # of an asymmetrical homodimer, duplex # # DNA assignments, or other assignments # # that may apply to atoms in one or more # # molecule in the molecular assembly) # # 9 Ambiguous, specific ambiguity not defined # # # ################################################################### save_assigned_chemical_shifts_2 _Assigned_chem_shift_list.Sf_category assigned_chemical_shifts _Assigned_chem_shift_list.Sf_framecode assigned_chemical_shifts_2 _Assigned_chem_shift_list.Entry_ID bmse010047 _Assigned_chem_shift_list.ID 2 _Assigned_chem_shift_list.Sample_condition_list_ID 1 _Assigned_chem_shift_list.Sample_condition_list_label $sample_conditions_1 _Assigned_chem_shift_list.Chem_shift_reference_ID 2 _Assigned_chem_shift_list.Chem_shift_reference_label $chem_shift_reference_2 _Assigned_chem_shift_list.Error_derivation_method ? _Assigned_chem_shift_list.Details ? loop_ _Chem_shift_experiment.Experiment_ID _Chem_shift_experiment.Experiment_name _Chem_shift_experiment.Sample_ID _Chem_shift_experiment.Sample_label _Chem_shift_experiment.Entry_ID _Chem_shift_experiment.Assigned_chem_shift_list_ID 2 '1D 13C' 2 $sample_2 bmse010047 2 stop_ loop_ _Chem_shift_software.Software_ID _Chem_shift_software.Software_label _Chem_shift_software.Method_ID _Chem_shift_software.Method_label _Chem_shift_software.Entry_ID _Chem_shift_software.Assigned_chem_shift_list_ID 1 $software_1 ? ? bmse010047 2 stop_ loop_ _Atom_chem_shift.ID _Atom_chem_shift.Entity_ID _Atom_chem_shift.Comp_index_ID _Atom_chem_shift.Comp_ID _Atom_chem_shift.Atom_ID _Atom_chem_shift.Atom_type _Atom_chem_shift.Atom_isotope_number _Atom_chem_shift.Val _Atom_chem_shift.Val_err _Atom_chem_shift.Assign_fig_of_merit _Atom_chem_shift.Ambiguity_code _Atom_chem_shift.Occupancy _Atom_chem_shift.Auth_seq_ID _Atom_chem_shift.Auth_comp_ID _Atom_chem_shift.Auth_atom_ID _Atom_chem_shift.Details _Atom_chem_shift.Entry_ID _Atom_chem_shift.Assigned_chem_shift_list_ID 1 1 1 1 C1 C 13 55.46 ? ? 1 ? ? ? OMe ? bmse010047 2 2 1 1 1 C5 C 13 61.09 ? ? 1 ? ? ? B6 ? bmse010047 2 3 1 1 1 C11 C 13 69.40 ? ? 1 ? ? ? B4 ? bmse010047 2 4 1 1 1 C13 C 13 70.09 ? ? 1 ? ? ? B2 ? bmse010047 2 5 1 1 1 C10 C 13 73.40 ? ? 1 ? ? ? B5 ? bmse010047 2 6 1 1 1 C6 C 13 76.66 ? ? 1 ? ? ? A ? bmse010047 2 7 1 1 1 C12 C 13 76.82 ? ? 1 ? ? ? B3 ? bmse010047 2 8 1 1 1 C14 C 13 101.52 ? ? 1 ? ? ? B1 ? bmse010047 2 9 1 1 1 C4 C 13 112.29 ? ? 1 ? ? ? A2 ? bmse010047 2 10 1 1 1 C3 C 13 114.90 ? ? 1 ? ? ? A5 ? bmse010047 2 11 1 1 1 C2 C 13 120.50 ? ? 1 ? ? ? A6 ? bmse010047 2 12 1 1 1 C7 C 13 128.57 ? ? 1 ? ? ? A1 ? bmse010047 2 13 1 1 1 C9 C 13 145.80 ? ? 1 ? ? ? A3 ? bmse010047 2 14 1 1 1 C8 C 13 147.25 ? ? 1 ? ? ? A4 ? bmse010047 2 stop_ save_