data_bmse010225 ####################### # Entry information # ####################### save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID bmse010225 _Entry.Title Syringic_acid_methyl_ester _Entry.Version_type update _Entry.Submission_date 2009-05-26 _Entry.Accession_date 2009-09-01 _Entry.Last_release_date 2013-04-05 _Entry.Original_release_date 2009-09-25 _Entry.Origination author _Entry.NMR_STAR_version 3.1.1.31 _Entry.Original_NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.DOI 10.13018/BMSE010225 _Entry.Details ? _Entry.BMRB_internal_directory_name Syringic_acid_methyl_ester loop_ _Entry_author.Ordinal _Entry_author.Given_name _Entry_author.Family_name _Entry_author.First_initial _Entry_author.Middle_initials _Entry_author.Family_title _Entry_author.Entry_ID 1 John Ralph ? ? ? bmse010225 2 Sally Ralph ? ? ? bmse010225 stop_ loop_ _Entry_src.ID _Entry_src.Project_name _Entry_src.Organization_full_name _Entry_src.Organization_initials _Entry_src.Entry_ID 1 'NMR Database of Lignin and Cell Wall Model Compounds' 'United States Department of Agriculture' USDA bmse010225 stop_ loop_ _Data_set.Type _Data_set.Count _Data_set.Entry_ID assigned_chemical_shifts 3 bmse010225 stop_ loop_ _Datum.Type _Datum.Count _Datum.Entry_ID '13C chemical shifts' 30 bmse010225 '1H chemical shifts' 11 bmse010225 stop_ loop_ _Release.Release_number _Release.Format_type _Release.Format_version _Release.Date _Release.Submission_date _Release.Type _Release.Author _Release.Detail _Release.Entry_ID 1 . . 2009-09-25 2009-05-26 original Author 'Original spectra from USDA' bmse010225 2 . . 2009-11-11 2009-05-26 update BMRB 'added author and source information' bmse010225 3 . . 2010-10-08 2009-05-26 update BMRB 'Removed empty loops for database compliance' bmse010225 4 . . 2010-11-30 2009-05-26 update BMRB 'Added 1 PDB ID to Chem_comp_db_link' bmse010225 5 . . 2010-12-01 2009-05-26 update BMRB 'Set correct NMR STAR version' bmse010225 6 . . 2011-04-04 2009-05-26 update BMRB 'Added Provenance tag to chem_comp' bmse010225 7 . . 2011-09-07 2009-05-26 update BMRB 'Ensured correct reference IDs' bmse010225 8 . . 2011-09-09 2009-05-26 update BMRB 'Brought up to date with latest Dictionary' bmse010225 9 . . 2011-12-14 2009-05-26 update BMRB 'Set Assembly.Name to match Chem_comp.name' bmse010225 10 . . 2011-12-16 2009-05-26 update BMRB 'Standardized solvent' bmse010225 11 . . 2012-02-24 2009-05-26 update BMRB 'Set Raw_data_flag to no, since there are no raw data' bmse010225 12 . . 2012-09-13 2009-05-26 update BMRB 'Added PubChem SID 111678061 to database loop' bmse010225 13 . . 2013-04-05 2009-05-26 update BMRB 'Adding molecule category to chem_comp Details' bmse010225 14 . . 2017-10-12 2017-10-12 update BMRB 'Remediated Experiment_file loop if present and standardized mol and png file tags.' bmse010225 15 . . 2018-07-10 2017-10-12 update BMRB 'InChI numbering updated according to ALATIS' bmse010225 stop_ save_ ############### # Citations # ############### save_citation_1 _Citation.Sf_category citations _Citation.Sf_framecode citation_1 _Citation.Entry_ID bmse010225 _Citation.ID 1 _Citation.Class 'entry citation' _Citation.PubMed_ID ? _Citation.Title 'NMR Database of Lignin and Cell Wall Model Compounds.' _Citation.Status published _Citation.Type internet _Citation.WWW_URL http://ars.usda.gov/Services/docs.htm?docid=10491 _Citation.Year 2004 _Citation.Details ? loop_ _Citation_author.Ordinal _Citation_author.Given_name _Citation_author.Family_name _Citation_author.First_initial _Citation_author.Middle_initials _Citation_author.Family_title _Citation_author.Entry_ID _Citation_author.Citation_ID 1 Sally Ralph ? A. ? bmse010225 1 2 John Ralph ? ? ? bmse010225 1 3 Larry Landucci ? L. ? bmse010225 1 stop_ save_ ############################################# # Molecular system (assembly) description # ############################################# save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID bmse010225 _Assembly.ID 1 _Assembly.Name 'Syringic acid methyl ester' _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions ? _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state 'not reported' loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 Syringic-acid-methyl-ester 1 $Syringic-acid-methyl-ester yes native no no ? ? ? bmse010225 1 stop_ save_ #################################### # Biological polymers and ligands # #################################### save_Syringic-acid-methyl-ester _Entity.Sf_category entity _Entity.Sf_framecode Syringic-acid-methyl-ester _Entity.Entry_ID bmse010225 _Entity.ID 1 _Entity.BMRB_code ? _Entity.Name 'Syringic acid methyl ester' _Entity.Type non-polymer _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Paramagnetic no _Entity.Thiol_state 'not reported' loop_ _Entity_comp_index.ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 1 $chem_comp_1 bmse010225 1 stop_ save_ #################### # Natural source # #################### save_natural_source _Entity_natural_src_list.Sf_category natural_source _Entity_natural_src_list.Sf_framecode natural_source _Entity_natural_src_list.Entry_ID bmse010225 _Entity_natural_src_list.ID 1 loop_ _Entity_natural_src.ID _Entity_natural_src.Entity_ID _Entity_natural_src.Entity_label _Entity_natural_src.Entity_chimera_segment_ID _Entity_natural_src.NCBI_taxonomy_ID _Entity_natural_src.Type _Entity_natural_src.Common _Entity_natural_src.Organism_name_scientific _Entity_natural_src.Organism_name_common _Entity_natural_src.Organism_acronym _Entity_natural_src.ICTVdb_decimal_code _Entity_natural_src.Superkingdom _Entity_natural_src.Kingdom _Entity_natural_src.Genus _Entity_natural_src.Species _Entity_natural_src.Strain _Entity_natural_src.Variant _Entity_natural_src.Subvariant _Entity_natural_src.Organ _Entity_natural_src.Tissue _Entity_natural_src.Tissue_fraction _Entity_natural_src.Cell_line _Entity_natural_src.Cell_type _Entity_natural_src.ATCC_number _Entity_natural_src.Organelle _Entity_natural_src.Cellular_location _Entity_natural_src.Fragment _Entity_natural_src.Fraction _Entity_natural_src.Secretion _Entity_natural_src.Plasmid _Entity_natural_src.Plasmid_details _Entity_natural_src.Gene_mnemonic _Entity_natural_src.Dev_stage _Entity_natural_src.Details _Entity_natural_src.Citation_ID _Entity_natural_src.Citation_label _Entity_natural_src.Entry_ID _Entity_natural_src.Entity_natural_src_list_ID 1 1 $Syringic-acid-methyl-ester . n/a 'multiple natural sources' yes 'not applicable' n/a . . Eukaryota Viridiplantae n/a n/a . . . . . . . . . . . . . . . . . . . . . bmse010225 1 stop_ save_ ######################### # Experimental source # ######################### save_experimental_source _Entity_experimental_src_list.Sf_category experimental_source _Entity_experimental_src_list.Sf_framecode experimental_source _Entity_experimental_src_list.Entry_ID bmse010225 _Entity_experimental_src_list.ID 1 loop_ _Entity_experimental_src.ID _Entity_experimental_src.Entity_ID _Entity_experimental_src.Entity_label _Entity_experimental_src.Entity_chimera_segment_ID _Entity_experimental_src.Production_method _Entity_experimental_src.Host_org_scientific_name _Entity_experimental_src.Host_org_name_common _Entity_experimental_src.Host_org_details _Entity_experimental_src.Host_org_NCBI_taxonomy_ID _Entity_experimental_src.Host_org_genus _Entity_experimental_src.Host_org_species _Entity_experimental_src.Host_org_strain _Entity_experimental_src.Host_org_variant _Entity_experimental_src.Host_org_subvariant _Entity_experimental_src.Host_org_organ _Entity_experimental_src.Host_org_tissue _Entity_experimental_src.Host_org_tissue_fraction _Entity_experimental_src.Host_org_cell_line _Entity_experimental_src.Host_org_cell_type _Entity_experimental_src.Host_org_cellular_location _Entity_experimental_src.Host_org_organelle _Entity_experimental_src.Host_org_gene _Entity_experimental_src.Host_org_culture_collection _Entity_experimental_src.Host_org_ATCC_number _Entity_experimental_src.Vector_type _Entity_experimental_src.PDBview_host_org_vector_name _Entity_experimental_src.PDBview_plasmid_name _Entity_experimental_src.Vector_name _Entity_experimental_src.Vector_details _Entity_experimental_src.Vendor_name _Entity_experimental_src.Host_org_dev_stage _Entity_experimental_src.Details _Entity_experimental_src.Citation_ID _Entity_experimental_src.Citation_label _Entity_experimental_src.Entry_ID _Entity_experimental_src.Entity_experimental_src_list_ID 1 1 $Syringic-acid-methyl-ester . 'chemical synthesis' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . bmse010225 1 stop_ save_ ################################# # Polymer residues and ligands # ################################# save_chem_comp_1 _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_1 _Chem_comp.Entry_ID bmse010225 _Chem_comp.ID 1 _Chem_comp.Provenance BMRB _Chem_comp.Name 'Syringic acid methyl ester' _Chem_comp.Type non-polymer _Chem_comp.BMRB_code ? _Chem_comp.PDB_code ? _Chem_comp.InChI_code InChI=1S/C10H12O5/c1-13-7-4-6(10(12)15-3)5-8(14-2)9(7)11/h4-5,11H,1-3H3 _Chem_comp.Mon_nstd_flag ? _Chem_comp.Std_deriv_one_letter_code ? _Chem_comp.Std_deriv_three_letter_code ? _Chem_comp.Std_deriv_BMRB_code ? _Chem_comp.Std_deriv_PDB_code ? _Chem_comp.Formal_charge ? _Chem_comp.Paramagnetic no _Chem_comp.Aromatic yes _Chem_comp.Formula 'C10 H12 O5' _Chem_comp.Formula_weight 212.19928 _Chem_comp.Formula_mono_iso_wt_nat 212.0684734957 _Chem_comp.Formula_mono_iso_wt_13C 222.1020218737 _Chem_comp.Formula_mono_iso_wt_15N 212.0684734957 _Chem_comp.Formula_mono_iso_wt_13C_15N 222.1020218737 _Chem_comp.Image_file_name bmse010225.png _Chem_comp.Image_file_format png _Chem_comp.Topo_file_name ? _Chem_comp.Topo_file_format ? _Chem_comp.Struct_file_name bmse010225.mol _Chem_comp.Struct_file_format mol _Chem_comp.Stereochem_param_file_name ? _Chem_comp.Details Monomers _Chem_comp.DB_query_date ? _Chem_comp.DB_last_query_revised_last_date ? loop_ _Chem_comp_common_name.Name _Chem_comp_common_name.Type _Chem_comp_common_name.Entry_ID _Chem_comp_common_name.Comp_ID 'Syringic acid methyl ester' synonym bmse010225 1 'methyl (4-hydroxy-3,5-dimethoxy)benzoate' synonym bmse010225 1 stop_ loop_ _Chem_comp_descriptor.Descriptor _Chem_comp_descriptor.Type _Chem_comp_descriptor.Program _Chem_comp_descriptor.Program_version _Chem_comp_descriptor.Entry_ID _Chem_comp_descriptor.Comp_ID InChI=1/C10H12O5/c1-13-7-4-6(10(12)15-3)5-8(14-2)9(7)11/h4-5,11H,1-3H3 INCHI na na bmse010225 1 InChI=1S/C10H12O5/c1-13-7-4-6(10(12)15-3)5-8(14-2)9(7)11/h4-5,11H,1-3H3 INCHI ALATIS 3.003 bmse010225 1 stop_ loop_ _Chem_comp_systematic_name.Name _Chem_comp_systematic_name.Naming_system _Chem_comp_systematic_name.Entry_ID _Chem_comp_systematic_name.Comp_ID 'Syringic acid methyl ester' Beilstein bmse010225 1 stop_ loop_ _Chem_comp_SMILES.Type _Chem_comp_SMILES.String _Chem_comp_SMILES.Entry_ID _Chem_comp_SMILES.Comp_ID Canonical COC1=C(C(=CC(=C1)C(=O)OC)OC)O bmse010225 1 Isomeric COC1=C(C(=CC(=C1)C(=O)OC)OC)O bmse010225 1 stop_ loop_ _Chem_comp_atom.Atom_ID _Chem_comp_atom.Auth_atom_ID _Chem_comp_atom.Type_symbol _Chem_comp_atom.Stereo_config _Chem_comp_atom.Charge _Chem_comp_atom.Oxidation_number _Chem_comp_atom.Unpaired_electron_number _Chem_comp_atom.Drawing_2D_coord_x _Chem_comp_atom.Drawing_2D_coord_y _Chem_comp_atom.Model_Cartn_x _Chem_comp_atom.Model_Cartn_y _Chem_comp_atom.Model_Cartn_z _Chem_comp_atom.PDBX_ordinal _Chem_comp_atom.Entry_ID _Chem_comp_atom.Comp_ID C1 3OMe C ? ? ? ? 358.1392 150.0000 ? ? ? 1 bmse010225 1 C2 5OMe C ? ? ? ? 191.8608 150.0000 ? ? ? 2 bmse010225 1 C3 AOMe C ? ? ? ? 302.7120 278.0000 ? ? ? 3 bmse010225 1 C4 2 C ? ? ? ? 302.7120 182.0000 ? ? ? 4 bmse010225 1 C5 6 C ? ? ? ? 247.2880 182.0000 ? ? ? 5 bmse010225 1 C6 1 C ? ? ? ? 275.0000 198.0000 ? ? ? 6 bmse010225 1 C7 3 C ? ? ? ? 302.7120 150.0000 ? ? ? 7 bmse010225 1 C8 5 C ? ? ? ? 247.2880 150.0000 ? ? ? 8 bmse010225 1 C9 4 C ? ? ? ? 275.0000 134.0000 ? ? ? 9 bmse010225 1 C10 A C ? ? ? ? 275.0000 230.0000 ? ? ? 10 bmse010225 1 O11 ? O ? ? ? ? 275.0000 102.0000 ? ? ? 11 bmse010225 1 O12 ? O ? ? ? ? 247.2880 246.0000 ? ? ? 12 bmse010225 1 O13 ? O ? ? ? ? 330.4240 134.0000 ? ? ? 13 bmse010225 1 O14 ? O ? ? ? ? 219.5728 134.0000 ? ? ? 14 bmse010225 1 O15 ? O ? ? ? ? 302.7120 246.0000 ? ? ? 15 bmse010225 1 H16 3OMe H ? ? ? ? 368.0586 132.8177 ? ? ? 16 bmse010225 1 H18 3OMe H ? ? ? ? 375.3215 159.9194 ? ? ? 17 bmse010225 1 H17 3OMe H ? ? ? ? 348.2198 167.1823 ? ? ? 18 bmse010225 1 H19 5OMe H ? ? ? ? 201.7810 167.1818 ? ? ? 19 bmse010225 1 H21 5OMe H ? ? ? ? 174.6790 159.9202 ? ? ? 20 bmse010225 1 H20 5OMe H ? ? ? ? 181.9406 132.8182 ? ? ? 21 bmse010225 1 H22 AOMe H ? ? ? ? 322.5520 278.0000 ? ? ? 22 bmse010225 1 H23 AOMe H ? ? ? ? 302.7120 297.8400 ? ? ? 23 bmse010225 1 H24 AOMe H ? ? ? ? 282.8720 278.0000 ? ? ? 24 bmse010225 1 H25 2 H ? ? ? ? 319.8940 191.9199 ? ? ? 25 bmse010225 1 H26 6 H ? ? ? ? 230.1060 191.9199 ? ? ? 26 bmse010225 1 H27 ? H ? ? ? ? 257.8181 92.0800 ? ? ? 27 bmse010225 1 stop_ loop_ _Atom_nomenclature.Atom_ID _Atom_nomenclature.Atom_name _Atom_nomenclature.Naming_system _Atom_nomenclature.Entry_ID _Atom_nomenclature.Comp_ID C1 C1 BMRB bmse010225 1 C2 C2 BMRB bmse010225 1 C3 C3 BMRB bmse010225 1 C4 C4 BMRB bmse010225 1 C5 C5 BMRB bmse010225 1 C6 C6 BMRB bmse010225 1 C7 C7 BMRB bmse010225 1 C8 C8 BMRB bmse010225 1 C9 C9 BMRB bmse010225 1 C10 C10 BMRB bmse010225 1 O11 O11 BMRB bmse010225 1 O12 O12 BMRB bmse010225 1 O13 O13 BMRB bmse010225 1 O14 O14 BMRB bmse010225 1 O15 O15 BMRB bmse010225 1 H16 H16 BMRB bmse010225 1 H18 H17 BMRB bmse010225 1 H17 H18 BMRB bmse010225 1 H19 H19 BMRB bmse010225 1 H21 H20 BMRB bmse010225 1 H20 H21 BMRB bmse010225 1 H22 H22 BMRB bmse010225 1 H23 H23 BMRB bmse010225 1 H24 H24 BMRB bmse010225 1 H25 H25 BMRB bmse010225 1 H26 H26 BMRB bmse010225 1 H27 H27 BMRB bmse010225 1 C1 C1 ALATIS bmse010225 1 C2 C2 ALATIS bmse010225 1 C3 C3 ALATIS bmse010225 1 C4 C4 ALATIS bmse010225 1 C5 C5 ALATIS bmse010225 1 C6 C6 ALATIS bmse010225 1 C7 C7 ALATIS bmse010225 1 C8 C8 ALATIS bmse010225 1 C9 C9 ALATIS bmse010225 1 C10 C10 ALATIS bmse010225 1 O11 O11 ALATIS bmse010225 1 O12 O12 ALATIS bmse010225 1 O13 O13 ALATIS bmse010225 1 O14 O14 ALATIS bmse010225 1 O15 O15 ALATIS bmse010225 1 H16 H16 ALATIS bmse010225 1 H18 H18 ALATIS bmse010225 1 H17 H17 ALATIS bmse010225 1 H19 H19 ALATIS bmse010225 1 H21 H21 ALATIS bmse010225 1 H20 H20 ALATIS bmse010225 1 H22 H22 ALATIS bmse010225 1 H23 H23 ALATIS bmse010225 1 H24 H24 ALATIS bmse010225 1 H25 H25 ALATIS bmse010225 1 H26 H26 ALATIS bmse010225 1 H27 H27 ALATIS bmse010225 1 stop_ loop_ _Chem_comp_bond.ID _Chem_comp_bond.Type _Chem_comp_bond.Value_order _Chem_comp_bond.Atom_ID_1 _Chem_comp_bond.Atom_ID_2 _Chem_comp_bond.Details _Chem_comp_bond.Entry_ID _Chem_comp_bond.Comp_ID 1 covalent SING C1 O13 ? bmse010225 1 2 covalent SING C2 O14 ? bmse010225 1 3 covalent SING C3 O15 ? bmse010225 1 4 covalent DOUB C4 C6 ? bmse010225 1 5 covalent SING C4 C7 ? bmse010225 1 6 covalent SING C5 C6 ? bmse010225 1 7 covalent DOUB C5 C8 ? bmse010225 1 8 covalent SING C6 C10 ? bmse010225 1 9 covalent DOUB C7 C9 ? bmse010225 1 10 covalent SING C7 O13 ? bmse010225 1 11 covalent SING C8 C9 ? bmse010225 1 12 covalent SING C8 O14 ? bmse010225 1 13 covalent SING C9 O11 ? bmse010225 1 14 covalent DOUB C10 O12 ? bmse010225 1 15 covalent SING C10 O15 ? bmse010225 1 16 covalent SING C1 H16 ? bmse010225 1 17 covalent SING C1 H18 ? bmse010225 1 18 covalent SING C1 H17 ? bmse010225 1 19 covalent SING C2 H19 ? bmse010225 1 20 covalent SING C2 H21 ? bmse010225 1 21 covalent SING C2 H20 ? bmse010225 1 22 covalent SING C3 H22 ? bmse010225 1 23 covalent SING C3 H23 ? bmse010225 1 24 covalent SING C3 H24 ? bmse010225 1 25 covalent SING C4 H25 ? bmse010225 1 26 covalent SING C5 H26 ? bmse010225 1 27 covalent SING O11 H27 ? bmse010225 1 stop_ loop_ _Chem_comp_db_link.Author_supplied _Chem_comp_db_link.Database_code _Chem_comp_db_link.Accession_code _Chem_comp_db_link.Accession_code_type _Chem_comp_db_link.Entry_mol_code _Chem_comp_db_link.Entry_mol_name _Chem_comp_db_link.Entry_experimental_method _Chem_comp_db_link.Entry_relation_type _Chem_comp_db_link.Entry_details _Chem_comp_db_link.Entry_ID _Chem_comp_db_link.Comp_ID no PubChem 111678061 sid ? 'Syringic acid methyl ester' ? 'matching entry' ? bmse010225 1 yes USDA_NMR_database 64 'Compound Number' ? 'Syringic acid methyl ester' ? 'matching entry' ? bmse010225 1 no PDB SYR 'Chemical Component' ? 'Syringic acid methyl ester' ? 'matching entry' ? bmse010225 1 stop_ loop_ _Chem_comp_citation.Citation_ID _Chem_comp_citation.Citation_label _Chem_comp_citation.Entry_ID _Chem_comp_citation.Comp_ID 1 $citation_1 bmse010225 1 stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_1 _Sample.Sf_category sample _Sample.Sf_framecode sample_1 _Sample.Entry_ID bmse010225 _Sample.ID 1 _Sample.Type solution loop_ _Sample_component.ID _Sample_component.Mol_common_name _Sample_component.Isotopic_labeling _Sample_component.Entity_ID _Sample_component.Entity_label _Sample_component.Product_ID _Sample_component.Type _Sample_component.Concentration_val _Sample_component.Concentration_val_min _Sample_component.Concentration_val_max _Sample_component.Concentration_val_units _Sample_component.Concentration_val_err _Sample_component.Vendor _Sample_component.Vendor_product_name _Sample_component.Vendor_product_code _Sample_component.Entry_ID _Sample_component.Sample_ID 1 'Syringic acid methyl ester' 'natural abundance' 1 $Syringic-acid-methyl-ester ? Solute 186.6 ? ? mg/ml ? 'John Ralph' 'Syringic acid methyl ester' n/a bmse010225 1 2 CDCl3 ? 1 ? ? Solvent 100 ? ? % ? ? ? ? bmse010225 1 stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_2 _Sample.Sf_category sample _Sample.Sf_framecode sample_2 _Sample.Entry_ID bmse010225 _Sample.ID 2 _Sample.Type solution loop_ _Sample_component.ID _Sample_component.Mol_common_name _Sample_component.Isotopic_labeling _Sample_component.Entity_ID _Sample_component.Entity_label _Sample_component.Product_ID _Sample_component.Type _Sample_component.Concentration_val _Sample_component.Concentration_val_min _Sample_component.Concentration_val_max _Sample_component.Concentration_val_units _Sample_component.Concentration_val_err _Sample_component.Vendor _Sample_component.Vendor_product_name _Sample_component.Vendor_product_code _Sample_component.Entry_ID _Sample_component.Sample_ID 1 'Syringic acid methyl ester' 'natural abundance' 1 $Syringic-acid-methyl-ester ? Solute 186.6 ? ? mg/ml ? 'John Ralph' 'Syringic acid methyl ester' n/a bmse010225 2 2 acetone '100% deuterated' 1 ? ? Solvent 100 ? ? % ? ? ? ? bmse010225 2 stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_3 _Sample.Sf_category sample _Sample.Sf_framecode sample_3 _Sample.Entry_ID bmse010225 _Sample.ID 3 _Sample.Type solution loop_ _Sample_component.ID _Sample_component.Mol_common_name _Sample_component.Isotopic_labeling _Sample_component.Entity_ID _Sample_component.Entity_label _Sample_component.Product_ID _Sample_component.Type _Sample_component.Concentration_val _Sample_component.Concentration_val_min _Sample_component.Concentration_val_max _Sample_component.Concentration_val_units _Sample_component.Concentration_val_err _Sample_component.Vendor _Sample_component.Vendor_product_name _Sample_component.Vendor_product_code _Sample_component.Entry_ID _Sample_component.Sample_ID 1 'Syringic acid methyl ester' 'natural abundance' 1 $Syringic-acid-methyl-ester ? Solute 186.6 ? ? mg/ml ? 'John Ralph' 'Syringic acid methyl ester' n/a bmse010225 3 2 DMSO '100% deuterated' 1 ? ? Solvent 100 ? ? % ? ? ? ? bmse010225 3 stop_ save_ ####################### # Sample conditions # ####################### save_sample_conditions_1 _Sample_condition_list.Sf_category sample_conditions _Sample_condition_list.Sf_framecode sample_conditions_1 _Sample_condition_list.Entry_ID bmse010225 _Sample_condition_list.ID 1 loop_ _Sample_condition_variable.Type _Sample_condition_variable.Val _Sample_condition_variable.Val_err _Sample_condition_variable.Val_units _Sample_condition_variable.Entry_ID _Sample_condition_variable.Sample_condition_list_ID pH n/a ? pH bmse010225 1 temperature 297 ? K bmse010225 1 stop_ save_ ############################ # Computer software used # ############################ save_software_1 _Software.Sf_category software _Software.Sf_framecode software_1 _Software.Entry_ID bmse010225 _Software.ID 1 _Software.Name X-WINNMR _Software.Version ? _Software.Details ? loop_ _Vendor.Name _Vendor.Address _Vendor.Electronic_address _Vendor.Entry_ID _Vendor.Software_ID Bruker ? ? bmse010225 1 stop_ loop_ _Task.Task _Task.Entry_ID _Task.Software_ID Processing bmse010225 1 stop_ save_ ######################### # Experimental detail # ######################### ################################## # NMR Spectrometer definitions # ################################## save_Bruker_250 _NMR_spectrometer.Sf_category NMR_spectrometer _NMR_spectrometer.Sf_framecode Bruker_250 _NMR_spectrometer.Entry_ID bmse010225 _NMR_spectrometer.ID 1 _NMR_spectrometer.Manufacturer Bruker _NMR_spectrometer.Model WM _NMR_spectrometer.Field_strength 250 save_ ############################# # NMR applied experiments # ############################# save_experiment_list _Experiment_list.Sf_category experiment_list _Experiment_list.Sf_framecode experiment_list _Experiment_list.Entry_ID bmse010225 _Experiment_list.ID 1 _Experiment_list.Details ? loop_ _Experiment.ID _Experiment.Name _Experiment.Raw_data_flag _Experiment.NMR_spec_expt_ID _Experiment.NMR_spec_expt_label _Experiment.Sample_ID _Experiment.Sample_label _Experiment.Sample_state _Experiment.Sample_condition_list_ID _Experiment.Sample_condition_list_label _Experiment.NMR_spectrometer_ID _Experiment.NMR_spectrometer_label _Experiment.NMR_spectral_processing_ID _Experiment.NMR_spectral_processing_label _Experiment.Entry_ID _Experiment.Experiment_list_ID 1 '1D 1H' no ? ? 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_250 ? ? bmse010225 1 2 '1D 13C' no ? ? 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_250 ? ? bmse010225 1 3 '1D 13C' no ? ? 2 $sample_2 isotropic 1 $sample_conditions_1 1 $Bruker_250 ? ? bmse010225 1 4 '1D 13C' no ? ? 3 $sample_3 isotropic 1 $sample_conditions_1 1 $Bruker_250 ? ? bmse010225 1 stop_ save_ #################### # NMR parameters # #################### ############################## # Assigned chemical shifts # ############################## ################################ # Chemical shift referencing # ################################ save_chem_shift_reference_1 _Chem_shift_reference.Sf_category chem_shift_reference _Chem_shift_reference.Sf_framecode chem_shift_reference_1 _Chem_shift_reference.Entry_ID bmse010225 _Chem_shift_reference.ID 1 _Chem_shift_reference.Details ? loop_ _Chem_shift_ref.Atom_type _Chem_shift_ref.Atom_isotope_number _Chem_shift_ref.Mol_common_name _Chem_shift_ref.Atom_group _Chem_shift_ref.Chem_shift_units _Chem_shift_ref.Chem_shift_val _Chem_shift_ref.Ref_method _Chem_shift_ref.Ref_type _Chem_shift_ref.Indirect_shift_ratio _Chem_shift_ref.External_ref_loc _Chem_shift_ref.External_ref_sample_geometry _Chem_shift_ref.External_ref_axis _Chem_shift_ref.Entry_ID _Chem_shift_ref.Chem_shift_reference_ID H 1 CDCl3 'residual solvent proton' ppm 7.24 internal direct 1.000000000 ? ? ? bmse010225 1 C 13 CDCl3 'solvent carbon' ppm 77.00 internal direct ? ? ? ? bmse010225 1 stop_ save_ #################### # NMR parameters # #################### ############################## # Assigned chemical shifts # ############################## ################################ # Chemical shift referencing # ################################ save_chem_shift_reference_2 _Chem_shift_reference.Sf_category chem_shift_reference _Chem_shift_reference.Sf_framecode chem_shift_reference_2 _Chem_shift_reference.Entry_ID bmse010225 _Chem_shift_reference.ID 2 _Chem_shift_reference.Details ? loop_ _Chem_shift_ref.Atom_type _Chem_shift_ref.Atom_isotope_number _Chem_shift_ref.Mol_common_name _Chem_shift_ref.Atom_group _Chem_shift_ref.Chem_shift_units _Chem_shift_ref.Chem_shift_val _Chem_shift_ref.Ref_method _Chem_shift_ref.Ref_type _Chem_shift_ref.Indirect_shift_ratio _Chem_shift_ref.External_ref_loc _Chem_shift_ref.External_ref_sample_geometry _Chem_shift_ref.External_ref_axis _Chem_shift_ref.Entry_ID _Chem_shift_ref.Chem_shift_reference_ID H 1 Acetone-d6 'residual solvent methyl proton' ppm 2.04 internal direct 1.000000000 ? ? ? bmse010225 2 C 13 Acetone-d6 'solvent methyl carbon' ppm 29.83 internal direct ? ? ? ? bmse010225 2 stop_ save_ #################### # NMR parameters # #################### ############################## # Assigned chemical shifts # ############################## ################################ # Chemical shift referencing # ################################ save_chem_shift_reference_3 _Chem_shift_reference.Sf_category chem_shift_reference _Chem_shift_reference.Sf_framecode chem_shift_reference_3 _Chem_shift_reference.Entry_ID bmse010225 _Chem_shift_reference.ID 3 _Chem_shift_reference.Details ? loop_ _Chem_shift_ref.Atom_type _Chem_shift_ref.Atom_isotope_number _Chem_shift_ref.Mol_common_name _Chem_shift_ref.Atom_group _Chem_shift_ref.Chem_shift_units _Chem_shift_ref.Chem_shift_val _Chem_shift_ref.Ref_method _Chem_shift_ref.Ref_type _Chem_shift_ref.Indirect_shift_ratio _Chem_shift_ref.External_ref_loc _Chem_shift_ref.External_ref_sample_geometry _Chem_shift_ref.External_ref_axis _Chem_shift_ref.Entry_ID _Chem_shift_ref.Chem_shift_reference_ID H 1 DMSO-d6 'residual solvent methyl proton' ppm 2.49 internal direct 1.000000000 ? ? ? bmse010225 3 C 13 DMSO-d6 'solvent methyl carbon' ppm 39.50 internal direct ? ? ? ? bmse010225 3 stop_ save_ ################################### # Assigned chemical shift lists # ################################### ################################################################### # Chemical Shift Ambiguity Index Value Definitions # # # # The values other than 1 are used for those atoms with different # # chemical shifts that cannot be assigned to stereospecific atoms # # or to specific residues or chains. # # # # Index Value Definition # # # # 1 Unique (including isolated methyl protons, # # geminal atoms, and geminal methyl # # groups with identical chemical shifts) # # (e.g. ILE HD11, HD12, HD13 protons) # # 2 Ambiguity of geminal atoms or geminal methyl # # proton groups (e.g. ASP HB2 and HB3 # # protons, LEU CD1 and CD2 carbons, or # # LEU HD11, HD12, HD13 and HD21, HD22, # # HD23 methyl protons) # # 3 Aromatic atoms on opposite sides of # # symmetrical rings (e.g. TYR HE1 and HE2 # # protons) # # 4 Intraresidue ambiguities (e.g. LYS HG and # # HD protons or TRP HZ2 and HZ3 protons) # # 5 Interresidue ambiguities (LYS 12 vs. LYS 27) # # 6 Intermolecular ambiguities (e.g. ASP 31 CA # # in monomer 1 and ASP 31 CA in monomer 2 # # of an asymmetrical homodimer, duplex # # DNA assignments, or other assignments # # that may apply to atoms in one or more # # molecule in the molecular assembly) # # 9 Ambiguous, specific ambiguity not defined # # # ################################################################### save_assigned_chemical_shifts_1 _Assigned_chem_shift_list.Sf_category assigned_chemical_shifts _Assigned_chem_shift_list.Sf_framecode assigned_chemical_shifts_1 _Assigned_chem_shift_list.Entry_ID bmse010225 _Assigned_chem_shift_list.ID 1 _Assigned_chem_shift_list.Sample_condition_list_ID 1 _Assigned_chem_shift_list.Sample_condition_list_label $sample_conditions_1 _Assigned_chem_shift_list.Chem_shift_reference_ID 1 _Assigned_chem_shift_list.Chem_shift_reference_label $chem_shift_reference_1 _Assigned_chem_shift_list.Error_derivation_method ? _Assigned_chem_shift_list.Details ? loop_ _Chem_shift_experiment.Experiment_ID _Chem_shift_experiment.Experiment_name _Chem_shift_experiment.Sample_ID _Chem_shift_experiment.Sample_label _Chem_shift_experiment.Entry_ID _Chem_shift_experiment.Assigned_chem_shift_list_ID 1 '1D 1H' 1 $sample_1 bmse010225 1 2 '1D 13C' 1 $sample_1 bmse010225 1 stop_ loop_ _Chem_shift_software.Software_ID _Chem_shift_software.Software_label _Chem_shift_software.Method_ID _Chem_shift_software.Method_label _Chem_shift_software.Entry_ID _Chem_shift_software.Assigned_chem_shift_list_ID 1 $software_1 ? ? bmse010225 1 stop_ loop_ _Atom_chem_shift.ID _Atom_chem_shift.Entity_ID _Atom_chem_shift.Comp_index_ID _Atom_chem_shift.Comp_ID _Atom_chem_shift.Atom_ID _Atom_chem_shift.Atom_type _Atom_chem_shift.Atom_isotope_number _Atom_chem_shift.Val _Atom_chem_shift.Val_err _Atom_chem_shift.Assign_fig_of_merit _Atom_chem_shift.Ambiguity_code _Atom_chem_shift.Occupancy _Atom_chem_shift.Auth_seq_ID _Atom_chem_shift.Auth_comp_ID _Atom_chem_shift.Auth_atom_ID _Atom_chem_shift.Details _Atom_chem_shift.Entry_ID _Atom_chem_shift.Assigned_chem_shift_list_ID 1 1 1 1 C3 C 13 52.07 ? ? 1 ? ? ? AOMe ? bmse010225 1 2 1 1 1 C1 C 13 56.41 ? ? 1 ? ? ? 3OMe ? bmse010225 1 3 1 1 1 C2 C 13 56.41 ? ? 1 ? ? ? 5OMe ? bmse010225 1 4 1 1 1 C4 C 13 106.80 ? ? 1 ? ? ? 2 ? bmse010225 1 5 1 1 1 C5 C 13 106.80 ? ? 1 ? ? ? 6 ? bmse010225 1 6 1 1 1 C6 C 13 120.96 ? ? 1 ? ? ? 1 ? bmse010225 1 7 1 1 1 C9 C 13 139.49 ? ? 1 ? ? ? 4 ? bmse010225 1 8 1 1 1 C7 C 13 146.78 ? ? 1 ? ? ? 3 ? bmse010225 1 9 1 1 1 C8 C 13 146.78 ? ? 1 ? ? ? 5 ? bmse010225 1 10 1 1 1 C10 C 13 166.92 ? ? 1 ? ? ? A ? bmse010225 1 11 1 1 1 H22 H 1 3.89 ? ? 1 ? ? ? AOMe ? bmse010225 1 12 1 1 1 H23 H 1 3.89 ? ? 1 ? ? ? AOMe ? bmse010225 1 13 1 1 1 H24 H 1 3.89 ? ? 1 ? ? ? AOMe ? bmse010225 1 14 1 1 1 H16 H 1 3.90 ? ? 1 ? ? ? 3OMe ? bmse010225 1 15 1 1 1 H18 H 1 3.90 ? ? 1 ? ? ? 3OMe ? bmse010225 1 16 1 1 1 H17 H 1 3.90 ? ? 1 ? ? ? 3OMe ? bmse010225 1 17 1 1 1 H19 H 1 3.90 ? ? 1 ? ? ? 5OMe ? bmse010225 1 18 1 1 1 H21 H 1 3.90 ? ? 1 ? ? ? 5OMe ? bmse010225 1 19 1 1 1 H20 H 1 3.90 ? ? 1 ? ? ? 5OMe ? bmse010225 1 20 1 1 1 H25 H 1 7.31 ? ? 1 ? ? ? 2 ? bmse010225 1 21 1 1 1 H26 H 1 7.31 ? ? 1 ? ? ? 6 ? bmse010225 1 stop_ save_ ################################### # Assigned chemical shift lists # ################################### ################################################################### # Chemical Shift Ambiguity Index Value Definitions # # # # The values other than 1 are used for those atoms with different # # chemical shifts that cannot be assigned to stereospecific atoms # # or to specific residues or chains. # # # # Index Value Definition # # # # 1 Unique (including isolated methyl protons, # # geminal atoms, and geminal methyl # # groups with identical chemical shifts) # # (e.g. ILE HD11, HD12, HD13 protons) # # 2 Ambiguity of geminal atoms or geminal methyl # # proton groups (e.g. ASP HB2 and HB3 # # protons, LEU CD1 and CD2 carbons, or # # LEU HD11, HD12, HD13 and HD21, HD22, # # HD23 methyl protons) # # 3 Aromatic atoms on opposite sides of # # symmetrical rings (e.g. TYR HE1 and HE2 # # protons) # # 4 Intraresidue ambiguities (e.g. LYS HG and # # HD protons or TRP HZ2 and HZ3 protons) # # 5 Interresidue ambiguities (LYS 12 vs. LYS 27) # # 6 Intermolecular ambiguities (e.g. ASP 31 CA # # in monomer 1 and ASP 31 CA in monomer 2 # # of an asymmetrical homodimer, duplex # # DNA assignments, or other assignments # # that may apply to atoms in one or more # # molecule in the molecular assembly) # # 9 Ambiguous, specific ambiguity not defined # # # ################################################################### save_assigned_chemical_shifts_2 _Assigned_chem_shift_list.Sf_category assigned_chemical_shifts _Assigned_chem_shift_list.Sf_framecode assigned_chemical_shifts_2 _Assigned_chem_shift_list.Entry_ID bmse010225 _Assigned_chem_shift_list.ID 2 _Assigned_chem_shift_list.Sample_condition_list_ID 1 _Assigned_chem_shift_list.Sample_condition_list_label $sample_conditions_1 _Assigned_chem_shift_list.Chem_shift_reference_ID 2 _Assigned_chem_shift_list.Chem_shift_reference_label $chem_shift_reference_2 _Assigned_chem_shift_list.Error_derivation_method ? _Assigned_chem_shift_list.Details ? loop_ _Chem_shift_experiment.Experiment_ID _Chem_shift_experiment.Experiment_name _Chem_shift_experiment.Sample_ID _Chem_shift_experiment.Sample_label _Chem_shift_experiment.Entry_ID _Chem_shift_experiment.Assigned_chem_shift_list_ID 3 '1D 13C' 2 $sample_2 bmse010225 2 stop_ loop_ _Chem_shift_software.Software_ID _Chem_shift_software.Software_label _Chem_shift_software.Method_ID _Chem_shift_software.Method_label _Chem_shift_software.Entry_ID _Chem_shift_software.Assigned_chem_shift_list_ID 1 $software_1 ? ? bmse010225 2 stop_ loop_ _Atom_chem_shift.ID _Atom_chem_shift.Entity_ID _Atom_chem_shift.Comp_index_ID _Atom_chem_shift.Comp_ID _Atom_chem_shift.Atom_ID _Atom_chem_shift.Atom_type _Atom_chem_shift.Atom_isotope_number _Atom_chem_shift.Val _Atom_chem_shift.Val_err _Atom_chem_shift.Assign_fig_of_merit _Atom_chem_shift.Ambiguity_code _Atom_chem_shift.Occupancy _Atom_chem_shift.Auth_seq_ID _Atom_chem_shift.Auth_comp_ID _Atom_chem_shift.Auth_atom_ID _Atom_chem_shift.Details _Atom_chem_shift.Entry_ID _Atom_chem_shift.Assigned_chem_shift_list_ID 1 1 1 1 C3 C 13 52.11 ? ? 1 ? ? ? AOMe ? bmse010225 2 2 1 1 1 C1 C 13 56.67 ? ? 1 ? ? ? 3OMe ? bmse010225 2 3 1 1 1 C2 C 13 56.67 ? ? 1 ? ? ? 5OMe ? bmse010225 2 4 1 1 1 C4 C 13 107.87 ? ? 1 ? ? ? 2 ? bmse010225 2 5 1 1 1 C5 C 13 107.87 ? ? 1 ? ? ? 6 ? bmse010225 2 6 1 1 1 C6 C 13 121.07 ? ? 1 ? ? ? 1 ? bmse010225 2 7 1 1 1 C9 C 13 141.65 ? ? 1 ? ? ? 4 ? bmse010225 2 8 1 1 1 C7 C 13 148.33 ? ? 1 ? ? ? 3 ? bmse010225 2 9 1 1 1 C8 C 13 148.33 ? ? 1 ? ? ? 5 ? bmse010225 2 10 1 1 1 C10 C 13 167.16 ? ? 1 ? ? ? A ? bmse010225 2 stop_ save_ ################################### # Assigned chemical shift lists # ################################### ################################################################### # Chemical Shift Ambiguity Index Value Definitions # # # # The values other than 1 are used for those atoms with different # # chemical shifts that cannot be assigned to stereospecific atoms # # or to specific residues or chains. # # # # Index Value Definition # # # # 1 Unique (including isolated methyl protons, # # geminal atoms, and geminal methyl # # groups with identical chemical shifts) # # (e.g. ILE HD11, HD12, HD13 protons) # # 2 Ambiguity of geminal atoms or geminal methyl # # proton groups (e.g. ASP HB2 and HB3 # # protons, LEU CD1 and CD2 carbons, or # # LEU HD11, HD12, HD13 and HD21, HD22, # # HD23 methyl protons) # # 3 Aromatic atoms on opposite sides of # # symmetrical rings (e.g. TYR HE1 and HE2 # # protons) # # 4 Intraresidue ambiguities (e.g. LYS HG and # # HD protons or TRP HZ2 and HZ3 protons) # # 5 Interresidue ambiguities (LYS 12 vs. LYS 27) # # 6 Intermolecular ambiguities (e.g. ASP 31 CA # # in monomer 1 and ASP 31 CA in monomer 2 # # of an asymmetrical homodimer, duplex # # DNA assignments, or other assignments # # that may apply to atoms in one or more # # molecule in the molecular assembly) # # 9 Ambiguous, specific ambiguity not defined # # # ################################################################### save_assigned_chemical_shifts_3 _Assigned_chem_shift_list.Sf_category assigned_chemical_shifts _Assigned_chem_shift_list.Sf_framecode assigned_chemical_shifts_3 _Assigned_chem_shift_list.Entry_ID bmse010225 _Assigned_chem_shift_list.ID 3 _Assigned_chem_shift_list.Sample_condition_list_ID 1 _Assigned_chem_shift_list.Sample_condition_list_label $sample_conditions_1 _Assigned_chem_shift_list.Chem_shift_reference_ID 3 _Assigned_chem_shift_list.Chem_shift_reference_label $chem_shift_reference_3 _Assigned_chem_shift_list.Error_derivation_method ? _Assigned_chem_shift_list.Details ? loop_ _Chem_shift_experiment.Experiment_ID _Chem_shift_experiment.Experiment_name _Chem_shift_experiment.Sample_ID _Chem_shift_experiment.Sample_label _Chem_shift_experiment.Entry_ID _Chem_shift_experiment.Assigned_chem_shift_list_ID 4 '1D 13C' 3 $sample_3 bmse010225 3 stop_ loop_ _Chem_shift_software.Software_ID _Chem_shift_software.Software_label _Chem_shift_software.Method_ID _Chem_shift_software.Method_label _Chem_shift_software.Entry_ID _Chem_shift_software.Assigned_chem_shift_list_ID 1 $software_1 ? ? bmse010225 3 stop_ loop_ _Atom_chem_shift.ID _Atom_chem_shift.Entity_ID _Atom_chem_shift.Comp_index_ID _Atom_chem_shift.Comp_ID _Atom_chem_shift.Atom_ID _Atom_chem_shift.Atom_type _Atom_chem_shift.Atom_isotope_number _Atom_chem_shift.Val _Atom_chem_shift.Val_err _Atom_chem_shift.Assign_fig_of_merit _Atom_chem_shift.Ambiguity_code _Atom_chem_shift.Occupancy _Atom_chem_shift.Auth_seq_ID _Atom_chem_shift.Auth_comp_ID _Atom_chem_shift.Auth_atom_ID _Atom_chem_shift.Details _Atom_chem_shift.Entry_ID _Atom_chem_shift.Assigned_chem_shift_list_ID 1 1 1 1 C3 C 13 51.78 ? ? 1 ? ? ? AOMe ? bmse010225 3 2 1 1 1 C1 C 13 56.04 ? ? 1 ? ? ? 3OMe ? bmse010225 3 3 1 1 1 C2 C 13 56.04 ? ? 1 ? ? ? 5OMe ? bmse010225 3 4 1 1 1 C4 C 13 106.82 ? ? 1 ? ? ? 2 ? bmse010225 3 5 1 1 1 C5 C 13 106.82 ? ? 1 ? ? ? 6 ? bmse010225 3 6 1 1 1 C6 C 13 119.28 ? ? 1 ? ? ? 1 ? bmse010225 3 7 1 1 1 C9 C 13 140.72 ? ? 1 ? ? ? 4 ? bmse010225 3 8 1 1 1 C7 C 13 147.58 ? ? 1 ? ? ? 3 ? bmse010225 3 9 1 1 1 C8 C 13 147.58 ? ? 1 ? ? ? 5 ? bmse010225 3 10 1 1 1 C10 C 13 166.10 ? ? 1 ? ? ? A ? bmse010225 3 stop_ save_